Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC31.29■■■□□ 2.6
CCDC88BA6NC98 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC31.29■■■□□ 2.6
CCDC88BA6NC98 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC31.29■■■□□ 2.6
CCDC88BA6NC98 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
CCDC88BA6NC98 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CCDC88BA6NC98 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CCDC88BA6NC98 AP006288.1-201ENST00000446065 395 ntBASIC31.29■■■□□ 2.6
CCDC88BA6NC98 KRT18P2-201ENST00000447938 1258 ntBASIC31.29■■■□□ 2.6
CCDC88BA6NC98 AC108751.1-201ENST00000490852 363 ntBASIC31.29■■■□□ 2.6
CCDC88BA6NC98 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC31.29■■■□□ 2.6
CCDC88BA6NC98 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC31.29■■■□□ 2.6
CCDC88BA6NC98 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CCDC88BA6NC98 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CCDC88BA6NC98 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC31.29■■■□□ 2.6
CCDC88BA6NC98 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC31.29■■■□□ 2.6
CCDC88BA6NC98 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
CCDC88BA6NC98 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CCDC88BA6NC98 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC31.28■■■□□ 2.6
CCDC88BA6NC98 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC31.28■■■□□ 2.6
CCDC88BA6NC98 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC31.28■■■□□ 2.6
CCDC88BA6NC98 COA5-202ENST00000409997 557 ntTSL 4 BASIC31.28■■■□□ 2.6
CCDC88BA6NC98 ALG1L5P-201ENST00000482043 771 ntBASIC31.28■■■□□ 2.6
CCDC88BA6NC98 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC31.28■■■□□ 2.6
CCDC88BA6NC98 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC31.28■■■□□ 2.6
CCDC88BA6NC98 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
CCDC88BA6NC98 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CCDC88BA6NC98 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CCDC88BA6NC98 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CCDC88BA6NC98 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CCDC88BA6NC98 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC31.28■■■□□ 2.6
CCDC88BA6NC98 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
CCDC88BA6NC98 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
CCDC88BA6NC98 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 ELK2BP-201ENST00000415014 1224 ntBASIC31.27■■■□□ 2.6
CCDC88BA6NC98 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 AC093010.1-201ENST00000473625 1624 ntBASIC31.27■■■□□ 2.6
CCDC88BA6NC98 ESPNP-201ENST00000270691 2015 ntBASIC31.27■■■□□ 2.6
CCDC88BA6NC98 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 BEX3-201ENST00000361298 921 ntTSL 2 BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 PRYP5-201ENST00000451909 266 ntBASIC31.27■■■□□ 2.6
CCDC88BA6NC98 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC31.27■■■□□ 2.6
CCDC88BA6NC98 AC006557.2-201ENST00000592985 1240 ntBASIC31.27■■■□□ 2.6
CCDC88BA6NC98 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
CCDC88BA6NC98 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 HNRNPA1P28-201ENST00000424481 961 ntBASIC31.26■■■□□ 2.59
CCDC88BA6NC98 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
CCDC88BA6NC98 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
CCDC88BA6NC98 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
CCDC88BA6NC98 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
CCDC88BA6NC98 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC31.25■■■□□ 2.59
CCDC88BA6NC98 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
CCDC88BA6NC98 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
CCDC88BA6NC98 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
CCDC88BA6NC98 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC31.25■■■□□ 2.59
CCDC88BA6NC98 RPS8P6-201ENST00000426177 609 ntBASIC31.25■■■□□ 2.59
CCDC88BA6NC98 AC136632.2-201ENST00000512891 861 ntBASIC31.25■■■□□ 2.59
CCDC88BA6NC98 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC31.25■■■□□ 2.59
CCDC88BA6NC98 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC31.25■■■□□ 2.59
CCDC88BA6NC98 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
CCDC88BA6NC98 AC148477.5-201ENST00000625164 1645 ntBASIC31.25■■■□□ 2.59
CCDC88BA6NC98 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC31.24■■■□□ 2.59
CCDC88BA6NC98 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC88BA6NC98 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC31.24■■■□□ 2.59
CCDC88BA6NC98 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC88BA6NC98 YBX1P5-201ENST00000509441 847 ntBASIC31.24■■■□□ 2.59
CCDC88BA6NC98 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC31.24■■■□□ 2.59
CCDC88BA6NC98 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC31.24■■■□□ 2.59
CCDC88BA6NC98 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC31.24■■■□□ 2.59
CCDC88BA6NC98 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC31.24■■■□□ 2.59
CCDC88BA6NC98 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC88BA6NC98 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC88BA6NC98 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC88BA6NC98 GMCL1P1-201ENST00000463439 1581 ntBASIC31.24■■■□□ 2.59
CCDC88BA6NC98 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC88BA6NC98 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC88BA6NC98 AC116562.4-201ENST00000641316 2276 ntBASIC31.23■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms