Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
USH1CQ9Y6N9 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.14■□□□□ 0.5
USH1CQ9Y6N9 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.5
USH1CQ9Y6N9 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
USH1CQ9Y6N9 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
USH1CQ9Y6N9 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 MYLKP1-201ENST00000509077 1580 ntBASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 AC083880.1-201ENST00000608266 535 ntBASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.14■□□□□ 0.49
USH1CQ9Y6N9 LINC00602-201ENST00000629776 2065 ntBASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 AC006970.2-201ENST00000450065 779 ntBASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 IKBKGP1-201ENST00000612193 1073 ntBASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USH1CQ9Y6N9 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 TSPY6P-201ENST00000448518 926 ntBASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 AC004264.1-201ENST00000608354 794 ntBASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
USH1CQ9Y6N9 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
USH1CQ9Y6N9 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms