Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 AL353801.3-201ENST00000609898 542 ntBASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.01■□□□□ 0.95
CTDP1Q9Y5B0 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 AC091607.1-201ENST00000490318 1060 ntBASIC21■□□□□ 0.95
CTDP1Q9Y5B0 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 AP005901.3-202ENST00000581653 237 ntBASIC21■□□□□ 0.95
CTDP1Q9Y5B0 AL031008.1-201ENST00000619963 541 ntBASIC21■□□□□ 0.95
CTDP1Q9Y5B0 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 AL499627.1-201ENST00000569373 2188 ntBASIC21■□□□□ 0.95
CTDP1Q9Y5B0 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21■□□□□ 0.95
CTDP1Q9Y5B0 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 POM121L3P-201ENST00000419331 1163 ntBASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTDP1Q9Y5B0 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 AC096582.2-201ENST00000510860 516 ntBASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTDP1Q9Y5B0 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 AL024508.2-201ENST00000607749 1894 ntBASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 FDX1P1-201ENST00000449115 551 ntBASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 AL160237.2-201ENST00000556165 472 ntBASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTDP1Q9Y5B0 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms