Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 AC112191.1-201ENST00000523689 701 ntBASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 TP53TG3HP-202ENST00000569755 579 ntBASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
COL25A1Q9BXS0 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.51
COL25A1Q9BXS0 AC008677.1-201ENST00000519230 1561 ntBASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 GPS2P2-201ENST00000430745 888 ntBASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 AL592309.1-201ENST00000443127 649 ntBASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 AC069120.2-201ENST00000524091 540 ntBASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 IGHV3OR16-16-201ENST00000563644 343 ntBASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 OR7E47P-204ENST00000575924 449 ntBASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL25A1Q9BXS0 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 INE1-201ENST00000456273 945 ntBASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 ARL16-210ENST00000574938 751 ntTSL 2 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 PFAS-212ENST00000625942 396 ntTSL 5 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL25A1Q9BXS0 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL25A1Q9BXS0 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL25A1Q9BXS0 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
COL25A1Q9BXS0 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL25A1Q9BXS0 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.24■□□□□ 0.51
COL25A1Q9BXS0 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.24■□□□□ 0.51
COL25A1Q9BXS0 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
COL25A1Q9BXS0 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL25A1Q9BXS0 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
COL25A1Q9BXS0 MIR4259-201ENST00000584466 101 ntBASIC18.24■□□□□ 0.51
COL25A1Q9BXS0 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.24■□□□□ 0.51
COL25A1Q9BXS0 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.24■□□□□ 0.51
COL25A1Q9BXS0 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.24■□□□□ 0.51
COL25A1Q9BXS0 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC18.24■□□□□ 0.51
COL25A1Q9BXS0 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 AC098614.1-201ENST00000368528 745 ntBASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.23■□□□□ 0.51
COL25A1Q9BXS0 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms