Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PAAF1Q9BRP4 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PAAF1Q9BRP4 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.33■□□□□ 0.69
PAAF1Q9BRP4 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.33■□□□□ 0.69
PAAF1Q9BRP4 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.33■□□□□ 0.69
PAAF1Q9BRP4 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
PAAF1Q9BRP4 HLA-A-201ENST00000376802 1334 ntBASIC19.33■□□□□ 0.69
PAAF1Q9BRP4 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.33■□□□□ 0.69
PAAF1Q9BRP4 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.33■□□□□ 0.69
PAAF1Q9BRP4 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PAAF1Q9BRP4 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
PAAF1Q9BRP4 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PAAF1Q9BRP4 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
PAAF1Q9BRP4 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.33■□□□□ 0.69
PAAF1Q9BRP4 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PAAF1Q9BRP4 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 AC079776.4-201ENST00000511039 504 ntBASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 PHGDH-209ENST00000641074 1780 ntBASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 AC093503.3-201ENST00000624917 2352 ntBASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.33■□□□□ 0.68
PAAF1Q9BRP4 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 AC112698.1-201ENST00000510299 916 ntBASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 AC073592.3-201ENST00000625118 1834 ntBASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PAAF1Q9BRP4 INTS4P1-201ENST00000438455 1935 ntBASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 AC087289.5-201ENST00000586076 3175 ntBASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 RNA5SP419-201ENST00000515908 135 ntBASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 AC148477.8-201ENST00000624298 468 ntBASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms