Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL12A1Q99715 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
COL12A1Q99715 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC15.81■□□□□ 0.12
COL12A1Q99715 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.81■□□□□ 0.12
COL12A1Q99715 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.81■□□□□ 0.12
COL12A1Q99715 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.81■□□□□ 0.12
COL12A1Q99715 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
COL12A1Q99715 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.81■□□□□ 0.12
COL12A1Q99715 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.81■□□□□ 0.12
COL12A1Q99715 AC005593.1-201ENST00000624894 515 ntBASIC15.81■□□□□ 0.12
COL12A1Q99715 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.81■□□□□ 0.12
COL12A1Q99715 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
COL12A1Q99715 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC15.81■□□□□ 0.12
COL12A1Q99715 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.81■□□□□ 0.12
COL12A1Q99715 CR383656.12-201ENST00000549567 513 ntBASIC15.81■□□□□ 0.12
COL12A1Q99715 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.81■□□□□ 0.12
COL12A1Q99715 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC15.81■□□□□ 0.12
COL12A1Q99715 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL12A1Q99715 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC15.81■□□□□ 0.12
COL12A1Q99715 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL12A1Q99715 LINC01126-201ENST00000623515 1646 ntBASIC15.8■□□□□ 0.12
COL12A1Q99715 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL12A1Q99715 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL12A1Q99715 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL12A1Q99715 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC15.8■□□□□ 0.12
COL12A1Q99715 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
COL12A1Q99715 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.8■□□□□ 0.12
COL12A1Q99715 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC15.8■□□□□ 0.12
COL12A1Q99715 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL12A1Q99715 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.8■□□□□ 0.12
COL12A1Q99715 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC15.8■□□□□ 0.12
COL12A1Q99715 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
COL12A1Q99715 KRT8P50-201ENST00000562022 1438 ntBASIC15.8■□□□□ 0.12
COL12A1Q99715 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL12A1Q99715 PMPCAP1-201ENST00000508114 1576 ntBASIC15.8■□□□□ 0.12
COL12A1Q99715 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
COL12A1Q99715 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.8■□□□□ 0.12
COL12A1Q99715 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
COL12A1Q99715 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL12A1Q99715 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL12A1Q99715 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
COL12A1Q99715 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL12A1Q99715 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC15.8■□□□□ 0.12
COL12A1Q99715 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC15.8■□□□□ 0.12
COL12A1Q99715 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.8■□□□□ 0.12
COL12A1Q99715 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.8■□□□□ 0.12
COL12A1Q99715 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL12A1Q99715 AC025678.2-201ENST00000562061 970 ntBASIC15.8■□□□□ 0.12
COL12A1Q99715 AC091812.2-201ENST00000619081 385 ntBASIC15.8■□□□□ 0.12
COL12A1Q99715 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL12A1Q99715 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL12A1Q99715 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
COL12A1Q99715 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL12A1Q99715 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL12A1Q99715 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
COL12A1Q99715 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
COL12A1Q99715 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.79■□□□□ 0.12
COL12A1Q99715 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.79■□□□□ 0.12
COL12A1Q99715 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC15.79■□□□□ 0.12
COL12A1Q99715 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC15.79■□□□□ 0.12
COL12A1Q99715 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.79■□□□□ 0.12
COL12A1Q99715 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
COL12A1Q99715 LINC01006-201ENST00000333319 2292 ntBASIC15.79■□□□□ 0.12
COL12A1Q99715 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
COL12A1Q99715 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.79■□□□□ 0.12
COL12A1Q99715 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.79■□□□□ 0.12
COL12A1Q99715 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC15.79■□□□□ 0.12
COL12A1Q99715 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
COL12A1Q99715 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC15.79■□□□□ 0.12
COL12A1Q99715 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC15.79■□□□□ 0.12
COL12A1Q99715 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC15.79■□□□□ 0.12
COL12A1Q99715 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms