Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 AL163051.1-201ENST00000569214 1512 ntBASIC17.91■□□□□ 0.46
VPS13AQ96RL7 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 SIGLEC30P-201ENST00000455569 941 ntBASIC17.9■□□□□ 0.46
VPS13AQ96RL7 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13AQ96RL7 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.89■□□□□ 0.46
VPS13AQ96RL7 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
VPS13AQ96RL7 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.46
VPS13AQ96RL7 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
VPS13AQ96RL7 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.89■□□□□ 0.46
VPS13AQ96RL7 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.89■□□□□ 0.46
VPS13AQ96RL7 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
VPS13AQ96RL7 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.89■□□□□ 0.46
VPS13AQ96RL7 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 AC018845.2-201ENST00000568326 409 ntBASIC17.89■□□□□ 0.45
VPS13AQ96RL7 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 AC093520.2-201ENST00000561830 333 ntBASIC17.89■□□□□ 0.45
VPS13AQ96RL7 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.89■□□□□ 0.45
VPS13AQ96RL7 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 CEND1P1-201ENST00000451006 455 ntBASIC17.88■□□□□ 0.45
VPS13AQ96RL7 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS13AQ96RL7 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13AQ96RL7 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms