Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 MIR3180-4-201ENST00000582223 153 ntBASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 GAS2L1P1-201ENST00000420145 1480 ntBASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CSMD1Q96PZ7 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 AC108751.1-201ENST00000490852 363 ntBASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 NKAPP1-205ENST00000585790 367 ntBASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CSMD1Q96PZ7 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 AL139288.1-201ENST00000623748 933 ntBASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 UGT1A2P-201ENST00000454886 866 ntBASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 AC109322.1-201ENST00000524499 1264 ntBASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 KRT89P-201ENST00000620027 1478 ntBASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 AL049812.1-201ENST00000432563 2267 ntBASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 REEP1-209ENST00000541910 969 ntTSL 2 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CSMD1Q96PZ7 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.39■□□□□ 0.06
CSMD1Q96PZ7 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.06
CSMD1Q96PZ7 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CSMD1Q96PZ7 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CSMD1Q96PZ7 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CSMD1Q96PZ7 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms