Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 AC011498.5-201ENST00000592027 486 ntBASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 AC007613.1-201ENST00000572811 2597 ntBASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 GMCL1P1-201ENST00000463439 1581 ntBASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD1Q96NR3 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
PTCHD1Q96NR3 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
PTCHD1Q96NR3 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
PTCHD1Q96NR3 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
PTCHD1Q96NR3 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.34
PTCHD1Q96NR3 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
PTCHD1Q96NR3 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 UPK3BP1-201ENST00000428678 509 ntBASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 AC008687.5-201ENST00000593746 558 ntBASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTCHD1Q96NR3 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 RNF126P1-202ENST00000569893 925 ntBASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 AC005332.3-201ENST00000589904 676 ntBASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 AL024508.2-201ENST00000607749 1894 ntBASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTCHD1Q96NR3 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms