Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 AC132938.6-201ENST00000623828 1655 ntBASIC14.07□□□□□ -0.16
CCDC140Q96MF4 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 TEN1-204ENST00000588202 862 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 FGF14-AS2-201ENST00000606448 1074 ntBASIC14.07□□□□□ -0.16
CCDC140Q96MF4 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 AP000997.3-201ENST00000623333 2250 ntBASIC14.07□□□□□ -0.16
CCDC140Q96MF4 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC140Q96MF4 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 COPE-203ENST00000351079 907 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 HBZP1-201ENST00000354915 429 ntBASIC14.06□□□□□ -0.16
CCDC140Q96MF4 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 FAM8A6P-201ENST00000407496 1135 ntBASIC14.06□□□□□ -0.16
CCDC140Q96MF4 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms