Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 GNE-204ENST00000539208 2190 ntTSL 2 BASIC13.65□□□□□ -0.22
LINC00477Q96M19 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC13.65□□□□□ -0.22
LINC00477Q96M19 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.22
LINC00477Q96M19 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC13.65□□□□□ -0.22
LINC00477Q96M19 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
LINC00477Q96M19 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC13.65□□□□□ -0.22
LINC00477Q96M19 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC13.65□□□□□ -0.22
LINC00477Q96M19 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC13.65□□□□□ -0.22
LINC00477Q96M19 MIR3180-4-201ENST00000582223 153 ntBASIC13.65□□□□□ -0.22
LINC00477Q96M19 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC13.65□□□□□ -0.22
LINC00477Q96M19 AC113410.3-201ENST00000623366 203 ntBASIC13.65□□□□□ -0.22
LINC00477Q96M19 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
LINC00477Q96M19 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC13.65□□□□□ -0.22
LINC00477Q96M19 AP000997.3-201ENST00000623333 2250 ntBASIC13.65□□□□□ -0.22
LINC00477Q96M19 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
LINC00477Q96M19 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 ASL-204ENST00000395331 1538 ntTSL 5 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 PEX7-202ENST00000367756 680 ntTSL 3 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 CCR12P-201ENST00000446203 998 ntBASIC13.64□□□□□ -0.23
LINC00477Q96M19 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 AL353719.1-201ENST00000566847 864 ntBASIC13.64□□□□□ -0.23
LINC00477Q96M19 WWOX-216ENST00000569818 525 ntBASIC13.64□□□□□ -0.23
LINC00477Q96M19 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 AC026471.5-201ENST00000615068 467 ntBASIC13.64□□□□□ -0.23
LINC00477Q96M19 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
LINC00477Q96M19 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LINC00477Q96M19 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 KIRREL3-AS3-201ENST00000404882 831 ntBASIC13.63□□□□□ -0.23
LINC00477Q96M19 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 PHB2-202ENST00000440277 996 ntTSL 5 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 TSPY20P-201ENST00000450910 630 ntBASIC13.63□□□□□ -0.23
LINC00477Q96M19 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 PENK-204ENST00000518770 863 ntTSL 2 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms