Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 INGX-202ENST00000489074 768 ntBASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 KRT8P50-201ENST00000562022 1438 ntBASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 DDT-204ENST00000404092 805 ntTSL 3 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 AL513210.1-201ENST00000629608 234 ntBASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC1BQ8NDV3 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 AC093214.1-201ENST00000511688 1107 ntBASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 PDPK2P-202ENST00000562415 1191 ntBASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 AC073130.3-201ENST00000624389 2278 ntBASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC1BQ8NDV3 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
SMC1BQ8NDV3 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 FAM58CP-201ENST00000435741 640 ntBASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 AC109322.1-201ENST00000524499 1264 ntBASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 AC093520.2-201ENST00000561830 333 ntBASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 AL390955.2-201ENST00000603032 514 ntBASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC21.45■■□□□ 1.02
SMC1BQ8NDV3 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 OR8S1-201ENST00000310194 1080 ntBASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 MEIS3P1-201ENST00000495167 958 ntBASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 MIR6752-201ENST00000618442 71 ntBASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms