Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 KRT18P28-201ENST00000453838 1332 ntBASIC12.6□□□□□ -0.39
CSMD3Q7Z407 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 PNMT-202ENST00000394246 821 ntTSL 2 BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 MIR770-201ENST00000390219 98 ntBASIC12.6□□□□□ -0.39
CSMD3Q7Z407 ETFA-208ENST00000559602 792 ntTSL 3 BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 SDCCAG3P1-201ENST00000589292 1150 ntBASIC12.6□□□□□ -0.39
CSMD3Q7Z407 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CSMD3Q7Z407 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 STOM-202ENST00000347359 870 ntTSL 2 BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 ASL-204ENST00000395331 1538 ntTSL 5 BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 SIGLEC16-201ENST00000599858 1437 ntBASIC12.59□□□□□ -0.39
CSMD3Q7Z407 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 AC068587.9-201ENST00000641814 219 ntBASIC12.59□□□□□ -0.39
CSMD3Q7Z407 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC12.59□□□□□ -0.39
CSMD3Q7Z407 AC093484.2-201ENST00000580996 2166 ntBASIC12.58□□□□□ -0.39
CSMD3Q7Z407 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC12.58□□□□□ -0.39
CSMD3Q7Z407 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC12.58□□□□□ -0.39
CSMD3Q7Z407 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
CSMD3Q7Z407 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 AC141586.3-201ENST00000562166 1838 ntBASIC12.58□□□□□ -0.4
CSMD3Q7Z407 AL032819.2-201ENST00000624543 2162 ntBASIC12.58□□□□□ -0.4
CSMD3Q7Z407 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 PON3-203ENST00000427422 894 ntTSL 3 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 AC105339.3-201ENST00000560043 636 ntBASIC12.58□□□□□ -0.4
CSMD3Q7Z407 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 AC007274.1-201ENST00000439805 662 ntBASIC12.58□□□□□ -0.4
CSMD3Q7Z407 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CSMD3Q7Z407 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms