Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
KRT39Q6A163 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
KRT39Q6A163 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
KRT39Q6A163 HBZP1-201ENST00000354915 429 ntBASIC19.64■□□□□ 0.73
KRT39Q6A163 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.64■□□□□ 0.73
KRT39Q6A163 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.64■□□□□ 0.73
KRT39Q6A163 AC113404.2-201ENST00000507884 177 ntBASIC19.64■□□□□ 0.73
KRT39Q6A163 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.64■□□□□ 0.73
KRT39Q6A163 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
KRT39Q6A163 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.64■□□□□ 0.73
KRT39Q6A163 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.64■□□□□ 0.73
KRT39Q6A163 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.64■□□□□ 0.73
KRT39Q6A163 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
KRT39Q6A163 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
KRT39Q6A163 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.64■□□□□ 0.73
KRT39Q6A163 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.64■□□□□ 0.73
KRT39Q6A163 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
KRT39Q6A163 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
KRT39Q6A163 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.63■□□□□ 0.73
KRT39Q6A163 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
KRT39Q6A163 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
KRT39Q6A163 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
KRT39Q6A163 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
KRT39Q6A163 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.63■□□□□ 0.73
KRT39Q6A163 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
KRT39Q6A163 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
KRT39Q6A163 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
KRT39Q6A163 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
KRT39Q6A163 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.63■□□□□ 0.73
KRT39Q6A163 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
KRT39Q6A163 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
KRT39Q6A163 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.63■□□□□ 0.73
KRT39Q6A163 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.63■□□□□ 0.73
KRT39Q6A163 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.63■□□□□ 0.73
KRT39Q6A163 LINC01238-205ENST00000567549 1107 ntBASIC19.63■□□□□ 0.73
KRT39Q6A163 HYMAI.1-201ENST00000620949 238 ntBASIC19.63■□□□□ 0.73
KRT39Q6A163 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
KRT39Q6A163 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
KRT39Q6A163 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
KRT39Q6A163 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
KRT39Q6A163 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
KRT39Q6A163 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.63■□□□□ 0.73
KRT39Q6A163 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
KRT39Q6A163 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
KRT39Q6A163 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.62■□□□□ 0.73
KRT39Q6A163 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.62■□□□□ 0.73
KRT39Q6A163 FAM210CP-201ENST00000445714 574 ntBASIC19.62■□□□□ 0.73
KRT39Q6A163 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.62■□□□□ 0.73
KRT39Q6A163 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.62■□□□□ 0.73
KRT39Q6A163 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.62■□□□□ 0.73
KRT39Q6A163 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.62■□□□□ 0.73
KRT39Q6A163 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.62■□□□□ 0.73
KRT39Q6A163 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.62■□□□□ 0.73
KRT39Q6A163 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.62■□□□□ 0.73
KRT39Q6A163 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.62■□□□□ 0.73
KRT39Q6A163 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.62■□□□□ 0.73
KRT39Q6A163 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.62■□□□□ 0.73
KRT39Q6A163 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.62■□□□□ 0.73
KRT39Q6A163 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KRT39Q6A163 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
KRT39Q6A163 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.61■□□□□ 0.73
KRT39Q6A163 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.61■□□□□ 0.73
KRT39Q6A163 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.61■□□□□ 0.73
KRT39Q6A163 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.61■□□□□ 0.73
KRT39Q6A163 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.61■□□□□ 0.73
KRT39Q6A163 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.61■□□□□ 0.73
KRT39Q6A163 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
KRT39Q6A163 KRT18P48-201ENST00000434763 852 ntBASIC19.61■□□□□ 0.73
KRT39Q6A163 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.61■□□□□ 0.73
KRT39Q6A163 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.61■□□□□ 0.73
KRT39Q6A163 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.61■□□□□ 0.73
KRT39Q6A163 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.61■□□□□ 0.73
KRT39Q6A163 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.61■□□□□ 0.73
KRT39Q6A163 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.61■□□□□ 0.73
KRT39Q6A163 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.61■□□□□ 0.73
KRT39Q6A163 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms