Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.96■■□□□ 1.11
VPS53Q5VIR6 AL671277.2-201ENST00000458060 996 ntBASIC21.96■■□□□ 1.11
VPS53Q5VIR6 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC21.96■■□□□ 1.11
VPS53Q5VIR6 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.96■■□□□ 1.11
VPS53Q5VIR6 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.96■■□□□ 1.11
VPS53Q5VIR6 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
VPS53Q5VIR6 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS53Q5VIR6 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
VPS53Q5VIR6 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
VPS53Q5VIR6 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS53Q5VIR6 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS53Q5VIR6 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS53Q5VIR6 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.96■■□□□ 1.11
VPS53Q5VIR6 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.11
VPS53Q5VIR6 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
VPS53Q5VIR6 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.11
VPS53Q5VIR6 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.95■■□□□ 1.11
VPS53Q5VIR6 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.95■■□□□ 1.11
VPS53Q5VIR6 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 AC093677.2-201ENST00000600169 1863 ntBASIC21.95■■□□□ 1.1
VPS53Q5VIR6 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 HLA-F-220ENST00000434407 884 ntBASIC21.95■■□□□ 1.1
VPS53Q5VIR6 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 AL136038.4-201ENST00000603606 1261 ntBASIC21.95■■□□□ 1.1
VPS53Q5VIR6 AL590326.2-201ENST00000625139 305 ntBASIC21.95■■□□□ 1.1
VPS53Q5VIR6 NOC2LP2-201ENST00000407594 1944 ntBASIC21.95■■□□□ 1.1
VPS53Q5VIR6 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 LINC01311-201ENST00000565162 1445 ntBASIC21.95■■□□□ 1.1
VPS53Q5VIR6 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS53Q5VIR6 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS53Q5VIR6 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS53Q5VIR6 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms