Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RPL39P62891 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC12.89□□□□□ -0.35
RPL39P62891 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
RPL39P62891 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RPL39P62891 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RPL39P62891 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
RPL39P62891 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RPL39P62891 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
RPL39P62891 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC12.89□□□□□ -0.35
RPL39P62891 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RPL39P62891 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
RPL39P62891 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
RPL39P62891 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
RPL39P62891 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
RPL39P62891 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RPL39P62891 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
RPL39P62891 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC12.89□□□□□ -0.35
RPL39P62891 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RPL39P62891 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RPL39P62891 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RPL39P62891 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RPL39P62891 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RPL39P62891 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RPL39P62891 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RPL39P62891 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC12.88□□□□□ -0.35
RPL39P62891 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC12.88□□□□□ -0.35
RPL39P62891 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC12.88□□□□□ -0.35
RPL39P62891 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
RPL39P62891 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC12.88□□□□□ -0.35
RPL39P62891 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC12.88□□□□□ -0.35
RPL39P62891 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC12.88□□□□□ -0.35
RPL39P62891 RARRES2P6-201ENST00000567333 442 ntBASIC12.88□□□□□ -0.35
RPL39P62891 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
RPL39P62891 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC12.88□□□□□ -0.35
RPL39P62891 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
RPL39P62891 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
RPL39P62891 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC12.88□□□□□ -0.35
RPL39P62891 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC12.88□□□□□ -0.35
RPL39P62891 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC12.88□□□□□ -0.35
RPL39P62891 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RPL39P62891 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC12.88□□□□□ -0.35
RPL39P62891 AL023806.1-201ENST00000603994 1649 ntBASIC12.88□□□□□ -0.35
RPL39P62891 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 AP001094.4-201ENST00000579008 2176 ntBASIC12.87□□□□□ -0.35
RPL39P62891 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC12.87□□□□□ -0.35
RPL39P62891 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC12.87□□□□□ -0.35
RPL39P62891 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC12.87□□□□□ -0.35
RPL39P62891 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC12.87□□□□□ -0.35
RPL39P62891 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC12.87□□□□□ -0.35
RPL39P62891 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC12.87□□□□□ -0.35
RPL39P62891 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC12.87□□□□□ -0.35
RPL39P62891 AC006970.2-201ENST00000450065 779 ntBASIC12.87□□□□□ -0.35
RPL39P62891 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC12.87□□□□□ -0.35
RPL39P62891 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC12.87□□□□□ -0.35
RPL39P62891 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC12.87□□□□□ -0.35
RPL39P62891 GLRB-205ENST00000512619 728 ntTSL 3 BASIC12.87□□□□□ -0.35
RPL39P62891 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC12.87□□□□□ -0.35
RPL39P62891 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
RPL39P62891 CFL2-205ENST00000555765 632 ntTSL 2 BASIC12.87□□□□□ -0.35
RPL39P62891 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC12.87□□□□□ -0.35
RPL39P62891 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC12.87□□□□□ -0.35
RPL39P62891 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 AC083880.1-201ENST00000608266 535 ntBASIC12.87□□□□□ -0.35
RPL39P62891 AC092437.1-201ENST00000624794 1048 ntBASIC12.87□□□□□ -0.35
RPL39P62891 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RPL39P62891 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms