Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
MRE11P49959 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.19■□□□□ 0.98
MRE11P49959 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MRE11P49959 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC21.18■□□□□ 0.98
MRE11P49959 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MRE11P49959 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC21.18■□□□□ 0.98
MRE11P49959 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.18■□□□□ 0.98
MRE11P49959 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC21.18■□□□□ 0.98
MRE11P49959 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC21.18■□□□□ 0.98
MRE11P49959 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
MRE11P49959 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21.18■□□□□ 0.98
MRE11P49959 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MRE11P49959 LSM12P1-201ENST00000411836 588 ntBASIC21.18■□□□□ 0.98
MRE11P49959 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.18■□□□□ 0.98
MRE11P49959 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MRE11P49959 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.18■□□□□ 0.98
MRE11P49959 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.18■□□□□ 0.98
MRE11P49959 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MRE11P49959 HLA-B-256ENST00000639848 1089 ntBASIC21.18■□□□□ 0.98
MRE11P49959 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MRE11P49959 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MRE11P49959 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MRE11P49959 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
MRE11P49959 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
MRE11P49959 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MRE11P49959 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
MRE11P49959 UBALD1-205ENST00000590891 2641 ntBASIC21.18■□□□□ 0.98
MRE11P49959 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MRE11P49959 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MRE11P49959 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MRE11P49959 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
MRE11P49959 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.17■□□□□ 0.98
MRE11P49959 AL162412.1-201ENST00000567129 965 ntBASIC21.17■□□□□ 0.98
MRE11P49959 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
MRE11P49959 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.17■□□□□ 0.98
MRE11P49959 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.17■□□□□ 0.98
MRE11P49959 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC21.17■□□□□ 0.98
MRE11P49959 AC069544.1-201ENST00000609399 999 ntBASIC21.17■□□□□ 0.98
MRE11P49959 MYC-208ENST00000641036 567 ntBASIC21.17■□□□□ 0.98
MRE11P49959 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.17■□□□□ 0.98
MRE11P49959 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC21.17■□□□□ 0.98
MRE11P49959 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC21.17■□□□□ 0.98
MRE11P49959 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRE11P49959 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
MRE11P49959 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC21.16■□□□□ 0.98
MRE11P49959 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
MRE11P49959 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.16■□□□□ 0.98
MRE11P49959 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.16■□□□□ 0.98
MRE11P49959 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.16■□□□□ 0.98
MRE11P49959 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 KRT126P-201ENST00000549467 1181 ntBASIC21.16■□□□□ 0.98
MRE11P49959 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC21.16■□□□□ 0.98
MRE11P49959 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
MRE11P49959 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC21.16■□□□□ 0.98
MRE11P49959 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC21.16■□□□□ 0.98
MRE11P49959 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
MRE11P49959 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
MRE11P49959 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRE11P49959 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC21.15■□□□□ 0.98
MRE11P49959 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MRE11P49959 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MRE11P49959 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC21.15■□□□□ 0.98
MRE11P49959 AC006116.8-202ENST00000587620 1550 ntBASIC21.15■□□□□ 0.98
MRE11P49959 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC21.15■□□□□ 0.98
MRE11P49959 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.15■□□□□ 0.98
MRE11P49959 KRT8P8-201ENST00000434750 1448 ntBASIC21.15■□□□□ 0.98
MRE11P49959 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MRE11P49959 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MRE11P49959 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC21.15■□□□□ 0.98
MRE11P49959 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms