Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.9■□□□□ 0.62
PTPN9P43378 ZNF444P1-201ENST00000559497 298 ntBASIC18.9■□□□□ 0.62
PTPN9P43378 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.9■□□□□ 0.62
PTPN9P43378 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.9■□□□□ 0.62
PTPN9P43378 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 AP000997.3-201ENST00000623333 2250 ntBASIC18.9■□□□□ 0.62
PTPN9P43378 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN9P43378 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
PTPN9P43378 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.89■□□□□ 0.62
PTPN9P43378 LINC00602-201ENST00000629776 2065 ntBASIC18.89■□□□□ 0.62
PTPN9P43378 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.89■□□□□ 0.61
PTPN9P43378 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN9P43378 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN9P43378 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.89■□□□□ 0.61
PTPN9P43378 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.89■□□□□ 0.61
PTPN9P43378 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN9P43378 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN9P43378 IGHGP-201ENST00000390555 1178 ntBASIC18.89■□□□□ 0.61
PTPN9P43378 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.89■□□□□ 0.61
PTPN9P43378 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.89■□□□□ 0.61
PTPN9P43378 AL049597.2-201ENST00000565575 961 ntBASIC18.89■□□□□ 0.61
PTPN9P43378 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.89■□□□□ 0.61
PTPN9P43378 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.89■□□□□ 0.61
PTPN9P43378 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.89■□□□□ 0.61
PTPN9P43378 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN9P43378 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.61
PTPN9P43378 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN9P43378 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN9P43378 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN9P43378 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN9P43378 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN9P43378 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
PTPN9P43378 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN9P43378 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
PTPN9P43378 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
PTPN9P43378 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN9P43378 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.88■□□□□ 0.61
PTPN9P43378 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
PTPN9P43378 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
PTPN9P43378 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PTPN9P43378 AP003733.1-201ENST00000491725 852 ntBASIC18.88■□□□□ 0.61
PTPN9P43378 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.88■□□□□ 0.61
PTPN9P43378 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.88■□□□□ 0.61
PTPN9P43378 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.88■□□□□ 0.61
PTPN9P43378 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.88■□□□□ 0.61
PTPN9P43378 AC004263.2-201ENST00000617183 678 ntBASIC18.88■□□□□ 0.61
PTPN9P43378 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.88■□□□□ 0.61
PTPN9P43378 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.88■□□□□ 0.61
PTPN9P43378 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.88■□□□□ 0.61
PTPN9P43378 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 NOC2LP2-201ENST00000407594 1944 ntBASIC18.88■□□□□ 0.61
PTPN9P43378 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN9P43378 AC008764.6-201ENST00000595909 2069 ntBASIC18.88■□□□□ 0.61
PTPN9P43378 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.88■□□□□ 0.61
PTPN9P43378 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
PTPN9P43378 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
PTPN9P43378 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN9P43378 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.87■□□□□ 0.61
PTPN9P43378 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN9P43378 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
PTPN9P43378 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN9P43378 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
PTPN9P43378 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.87■□□□□ 0.61
PTPN9P43378 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
PTPN9P43378 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN9P43378 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN9P43378 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN9P43378 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN9P43378 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN9P43378 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN9P43378 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
PTPN9P43378 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.87■□□□□ 0.61
PTPN9P43378 AC026471.1-201ENST00000564629 3026 ntBASIC18.87■□□□□ 0.61
PTPN9P43378 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.87■□□□□ 0.61
PTPN9P43378 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN9P43378 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN9P43378 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms