Protein–RNA interactions for Protein: P12035

KRT3, Keratin, type II cytoskeletal 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT3P12035 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT3P12035 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT3P12035 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
KRT3P12035 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
KRT3P12035 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
KRT3P12035 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
KRT3P12035 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
KRT3P12035 AL441883.1-201ENST00000566170 1045 ntBASIC19.18■□□□□ 0.66
KRT3P12035 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
KRT3P12035 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
KRT3P12035 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
KRT3P12035 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
KRT3P12035 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT3P12035 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT3P12035 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT3P12035 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT3P12035 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.18■□□□□ 0.66
KRT3P12035 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.18■□□□□ 0.66
KRT3P12035 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.18■□□□□ 0.66
KRT3P12035 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT3P12035 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
KRT3P12035 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
KRT3P12035 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.17■□□□□ 0.66
KRT3P12035 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.17■□□□□ 0.66
KRT3P12035 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
KRT3P12035 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.17■□□□□ 0.66
KRT3P12035 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 PVRIG2P-201ENST00000435460 978 ntBASIC19.17■□□□□ 0.66
KRT3P12035 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.17■□□□□ 0.66
KRT3P12035 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.17■□□□□ 0.66
KRT3P12035 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.17■□□□□ 0.66
KRT3P12035 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
KRT3P12035 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
KRT3P12035 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.17■□□□□ 0.66
KRT3P12035 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
KRT3P12035 AC139887.4-201ENST00000607877 719 ntBASIC19.17■□□□□ 0.66
KRT3P12035 AC011558.1-201ENST00000623459 338 ntBASIC19.17■□□□□ 0.66
KRT3P12035 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
KRT3P12035 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
KRT3P12035 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
KRT3P12035 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.17■□□□□ 0.66
KRT3P12035 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
KRT3P12035 HTR7P1-202ENST00000624664 4411 ntBASIC19.17■□□□□ 0.66
KRT3P12035 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.17■□□□□ 0.66
KRT3P12035 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
KRT3P12035 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT3P12035 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
KRT3P12035 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
KRT3P12035 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
KRT3P12035 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT3P12035 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT3P12035 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
KRT3P12035 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.16■□□□□ 0.66
KRT3P12035 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.16■□□□□ 0.66
KRT3P12035 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT3P12035 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT3P12035 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
KRT3P12035 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
KRT3P12035 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.16■□□□□ 0.66
KRT3P12035 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.16■□□□□ 0.66
KRT3P12035 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.16■□□□□ 0.66
KRT3P12035 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
KRT3P12035 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.16■□□□□ 0.66
KRT3P12035 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
KRT3P12035 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT3P12035 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
KRT3P12035 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
KRT3P12035 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.16■□□□□ 0.66
KRT3P12035 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
KRT3P12035 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT3P12035 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
KRT3P12035 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.15■□□□□ 0.66
KRT3P12035 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT3P12035 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.15■□□□□ 0.66
KRT3P12035 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT3P12035 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
KRT3P12035 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT3P12035 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT3P12035 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT3P12035 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT3P12035 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.15■□□□□ 0.66
KRT3P12035 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms