Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HLA-DOAP06340 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC21.38■■□□□ 1.01
HLA-DOAP06340 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.38■■□□□ 1.01
HLA-DOAP06340 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC21.38■■□□□ 1.01
HLA-DOAP06340 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.38■■□□□ 1.01
HLA-DOAP06340 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC21.38■■□□□ 1.01
HLA-DOAP06340 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC21.38■■□□□ 1.01
HLA-DOAP06340 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
HLA-DOAP06340 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HLA-DOAP06340 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HLA-DOAP06340 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC21.37■■□□□ 1.01
HLA-DOAP06340 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HLA-DOAP06340 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HLA-DOAP06340 AC126763.1-201ENST00000552015 2118 ntBASIC21.37■■□□□ 1.01
HLA-DOAP06340 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
HLA-DOAP06340 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC21.37■■□□□ 1.01
HLA-DOAP06340 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
HLA-DOAP06340 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HLA-DOAP06340 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HLA-DOAP06340 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
HLA-DOAP06340 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC21.37■■□□□ 1.01
HLA-DOAP06340 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC21.37■■□□□ 1.01
HLA-DOAP06340 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC21.37■■□□□ 1.01
HLA-DOAP06340 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
HLA-DOAP06340 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC21.37■■□□□ 1.01
HLA-DOAP06340 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
HLA-DOAP06340 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
HLA-DOAP06340 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
HLA-DOAP06340 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.37■■□□□ 1.01
HLA-DOAP06340 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
HLA-DOAP06340 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
HLA-DOAP06340 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.37■■□□□ 1.01
HLA-DOAP06340 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC21.37■■□□□ 1.01
HLA-DOAP06340 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HLA-DOAP06340 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HLA-DOAP06340 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
HLA-DOAP06340 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HLA-DOAP06340 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
HLA-DOAP06340 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC21.36■■□□□ 1.01
HLA-DOAP06340 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
HLA-DOAP06340 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
HLA-DOAP06340 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HLA-DOAP06340 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC21.36■■□□□ 1.01
HLA-DOAP06340 AC132008.2-207ENST00000454517 770 ntBASIC21.36■■□□□ 1.01
HLA-DOAP06340 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
HLA-DOAP06340 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
HLA-DOAP06340 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC21.36■■□□□ 1.01
HLA-DOAP06340 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC21.36■■□□□ 1.01
HLA-DOAP06340 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
HLA-DOAP06340 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.36■■□□□ 1.01
HLA-DOAP06340 AC125634.1-201ENST00000438758 1403 ntBASIC21.36■■□□□ 1.01
HLA-DOAP06340 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
HLA-DOAP06340 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
HLA-DOAP06340 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HLA-DOAP06340 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC21.36■■□□□ 1.01
HLA-DOAP06340 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
HLA-DOAP06340 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HLA-DOAP06340 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HLA-DOAP06340 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HLA-DOAP06340 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
HLA-DOAP06340 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HLA-DOAP06340 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
HLA-DOAP06340 ESPNP-201ENST00000270691 2015 ntBASIC21.35■■□□□ 1.01
HLA-DOAP06340 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.35■■□□□ 1.01
HLA-DOAP06340 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
HLA-DOAP06340 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
HLA-DOAP06340 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
HLA-DOAP06340 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC21.35■■□□□ 1.01
HLA-DOAP06340 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HLA-DOAP06340 MRPL3P1-201ENST00000400109 1033 ntBASIC21.35■■□□□ 1.01
HLA-DOAP06340 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC21.35■■□□□ 1.01
HLA-DOAP06340 AC112698.1-201ENST00000510299 916 ntBASIC21.35■■□□□ 1.01
HLA-DOAP06340 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC21.35■■□□□ 1.01
HLA-DOAP06340 IRF8-202ENST00000562492 946 ntTSL 3 BASIC21.35■■□□□ 1.01
HLA-DOAP06340 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC21.35■■□□□ 1.01
HLA-DOAP06340 AC064862.7-201ENST00000604520 867 ntBASIC21.35■■□□□ 1.01
HLA-DOAP06340 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
HLA-DOAP06340 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HLA-DOAP06340 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC21.35■■□□□ 1.01
HLA-DOAP06340 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HLA-DOAP06340 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
HLA-DOAP06340 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
HLA-DOAP06340 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
HLA-DOAP06340 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HLA-DOAP06340 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
HLA-DOAP06340 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HLA-DOAP06340 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
HLA-DOAP06340 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.34■■□□□ 1.01
HLA-DOAP06340 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.34■■□□□ 1.01
HLA-DOAP06340 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HLA-DOAP06340 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
HLA-DOAP06340 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC21.34■■□□□ 1.01
HLA-DOAP06340 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms