Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TNFP01375 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TNFP01375 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TNFP01375 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TNFP01375 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.72■□□□□ 0.43
TNFP01375 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TNFP01375 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TNFP01375 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.72■□□□□ 0.43
TNFP01375 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TNFP01375 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TNFP01375 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TNFP01375 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.72■□□□□ 0.43
TNFP01375 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TNFP01375 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.72■□□□□ 0.43
TNFP01375 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.72■□□□□ 0.43
TNFP01375 AC009533.2-201ENST00000543664 586 ntBASIC17.72■□□□□ 0.43
TNFP01375 AL160237.2-201ENST00000556165 472 ntBASIC17.72■□□□□ 0.43
TNFP01375 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.72■□□□□ 0.43
TNFP01375 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.72■□□□□ 0.43
TNFP01375 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.72■□□□□ 0.43
TNFP01375 AC126763.1-201ENST00000552015 2118 ntBASIC17.72■□□□□ 0.43
TNFP01375 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.72■□□□□ 0.43
TNFP01375 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TNFP01375 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TNFP01375 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TNFP01375 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.71■□□□□ 0.43
TNFP01375 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.71■□□□□ 0.43
TNFP01375 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TNFP01375 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
TNFP01375 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 AC079781.3-201ENST00000449110 356 ntBASIC17.71■□□□□ 0.43
TNFP01375 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.71■□□□□ 0.43
TNFP01375 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.71■□□□□ 0.43
TNFP01375 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.71■□□□□ 0.43
TNFP01375 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.71■□□□□ 0.43
TNFP01375 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.71■□□□□ 0.43
TNFP01375 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
TNFP01375 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.71■□□□□ 0.43
TNFP01375 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.71■□□□□ 0.43
TNFP01375 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.71■□□□□ 0.43
TNFP01375 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.71■□□□□ 0.43
TNFP01375 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.71■□□□□ 0.43
TNFP01375 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.71■□□□□ 0.43
TNFP01375 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.71■□□□□ 0.43
TNFP01375 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
TNFP01375 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TNFP01375 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
TNFP01375 CROCCP3-202ENST00000420820 1947 ntBASIC17.7■□□□□ 0.42
TNFP01375 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.7■□□□□ 0.42
TNFP01375 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.7■□□□□ 0.42
TNFP01375 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.7■□□□□ 0.42
TNFP01375 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.7■□□□□ 0.42
TNFP01375 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
TNFP01375 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.7■□□□□ 0.42
TNFP01375 FDX1P1-201ENST00000449115 551 ntBASIC17.7■□□□□ 0.42
TNFP01375 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.7■□□□□ 0.42
TNFP01375 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
TNFP01375 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.7■□□□□ 0.42
TNFP01375 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.7■□□□□ 0.42
TNFP01375 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.7■□□□□ 0.42
TNFP01375 AC005336.2-201ENST00000593183 939 ntBASIC17.7■□□□□ 0.42
TNFP01375 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.7■□□□□ 0.42
TNFP01375 AL121912.1-201ENST00000603683 238 ntBASIC17.7■□□□□ 0.42
TNFP01375 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.7■□□□□ 0.42
TNFP01375 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
TNFP01375 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.7■□□□□ 0.42
TNFP01375 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.7■□□□□ 0.42
TNFP01375 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TNFP01375 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
TNFP01375 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms