Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
RNF40O75150 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.64■□□□□ 0.73
RNF40O75150 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNF40O75150 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
RNF40O75150 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNF40O75150 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNF40O75150 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
RNF40O75150 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
RNF40O75150 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
RNF40O75150 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.63■□□□□ 0.73
RNF40O75150 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.63■□□□□ 0.73
RNF40O75150 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.63■□□□□ 0.73
RNF40O75150 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
RNF40O75150 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC19.63■□□□□ 0.73
RNF40O75150 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.63■□□□□ 0.73
RNF40O75150 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.63■□□□□ 0.73
RNF40O75150 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.63■□□□□ 0.73
RNF40O75150 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.63■□□□□ 0.73
RNF40O75150 AL031432.5-201ENST00000641059 760 ntBASIC19.63■□□□□ 0.73
RNF40O75150 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.63■□□□□ 0.73
RNF40O75150 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
RNF40O75150 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
RNF40O75150 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
RNF40O75150 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.63■□□□□ 0.73
RNF40O75150 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
RNF40O75150 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF40O75150 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF40O75150 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF40O75150 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RNF40O75150 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF40O75150 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF40O75150 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF40O75150 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RNF40O75150 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF40O75150 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF40O75150 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF40O75150 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF40O75150 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
RNF40O75150 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.62■□□□□ 0.73
RNF40O75150 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.62■□□□□ 0.73
RNF40O75150 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF40O75150 CA15P1-201ENST00000481698 905 ntBASIC19.62■□□□□ 0.73
RNF40O75150 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF40O75150 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF40O75150 KRT18P56-201ENST00000507275 550 ntBASIC19.62■□□□□ 0.73
RNF40O75150 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.62■□□□□ 0.73
RNF40O75150 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF40O75150 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.62■□□□□ 0.73
RNF40O75150 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.62■□□□□ 0.73
RNF40O75150 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.62■□□□□ 0.73
RNF40O75150 AL023973.1-201ENST00000624619 620 ntBASIC19.62■□□□□ 0.73
RNF40O75150 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
RNF40O75150 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.62■□□□□ 0.73
RNF40O75150 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF40O75150 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
RNF40O75150 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.62■□□□□ 0.73
RNF40O75150 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF40O75150 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF40O75150 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.62■□□□□ 0.73
RNF40O75150 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF40O75150 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF40O75150 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF40O75150 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF40O75150 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
RNF40O75150 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RNF40O75150 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
RNF40O75150 AC134043.2-201ENST00000624206 2238 ntBASIC19.61■□□□□ 0.73
RNF40O75150 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
RNF40O75150 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.61■□□□□ 0.73
RNF40O75150 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
RNF40O75150 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF40O75150 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.61■□□□□ 0.73
RNF40O75150 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF40O75150 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF40O75150 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.61■□□□□ 0.73
RNF40O75150 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF40O75150 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
RNF40O75150 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF40O75150 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms