Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
SNX3O60493 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SNX3O60493 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SNX3O60493 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SNX3O60493 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SNX3O60493 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SNX3O60493 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
SNX3O60493 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SNX3O60493 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.92■□□□□ 0.46
SNX3O60493 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.92■□□□□ 0.46
SNX3O60493 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.92■□□□□ 0.46
SNX3O60493 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.92■□□□□ 0.46
SNX3O60493 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
SNX3O60493 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
SNX3O60493 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.92■□□□□ 0.46
SNX3O60493 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.92■□□□□ 0.46
SNX3O60493 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.92■□□□□ 0.46
SNX3O60493 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.92■□□□□ 0.46
SNX3O60493 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC17.92■□□□□ 0.46
SNX3O60493 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC17.92■□□□□ 0.46
SNX3O60493 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.92■□□□□ 0.46
SNX3O60493 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.92■□□□□ 0.46
SNX3O60493 MDK-213ENST00000617138 635 ntTSL 2 BASIC17.92■□□□□ 0.46
SNX3O60493 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC17.92■□□□□ 0.46
SNX3O60493 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.92■□□□□ 0.46
SNX3O60493 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SNX3O60493 FLJ38576-201ENST00000623820 2459 ntBASIC17.92■□□□□ 0.46
SNX3O60493 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SNX3O60493 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.91■□□□□ 0.46
SNX3O60493 AL109659.2-201ENST00000606809 1674 ntBASIC17.91■□□□□ 0.46
SNX3O60493 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SNX3O60493 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SNX3O60493 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
SNX3O60493 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.91■□□□□ 0.46
SNX3O60493 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.91■□□□□ 0.46
SNX3O60493 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.91■□□□□ 0.46
SNX3O60493 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.91■□□□□ 0.46
SNX3O60493 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.91■□□□□ 0.46
SNX3O60493 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
SNX3O60493 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SNX3O60493 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.91■□□□□ 0.46
SNX3O60493 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SNX3O60493 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.9■□□□□ 0.46
SNX3O60493 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.9■□□□□ 0.46
SNX3O60493 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.9■□□□□ 0.46
SNX3O60493 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.9■□□□□ 0.46
SNX3O60493 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SNX3O60493 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SNX3O60493 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.9■□□□□ 0.46
SNX3O60493 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.9■□□□□ 0.46
SNX3O60493 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.9■□□□□ 0.46
SNX3O60493 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SNX3O60493 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.9■□□□□ 0.46
SNX3O60493 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
SNX3O60493 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms