Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.87■□□□□ 0.77
CLDN3O15551 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.87■□□□□ 0.77
CLDN3O15551 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CLDN3O15551 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
CLDN3O15551 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN3O15551 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN3O15551 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
CLDN3O15551 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN3O15551 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN3O15551 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
CLDN3O15551 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.86■□□□□ 0.77
CLDN3O15551 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN3O15551 AL353692.3-201ENST00000407031 1396 ntBASIC19.86■□□□□ 0.77
CLDN3O15551 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CLDN3O15551 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CLDN3O15551 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
CLDN3O15551 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN3O15551 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.86■□□□□ 0.77
CLDN3O15551 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN3O15551 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.86■□□□□ 0.77
CLDN3O15551 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.86■□□□□ 0.77
CLDN3O15551 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN3O15551 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN3O15551 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.86■□□□□ 0.77
CLDN3O15551 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.86■□□□□ 0.77
CLDN3O15551 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN3O15551 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.86■□□□□ 0.77
CLDN3O15551 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.86■□□□□ 0.77
CLDN3O15551 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN3O15551 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.86■□□□□ 0.77
CLDN3O15551 AC090164.3-201ENST00000610780 2143 ntBASIC19.86■□□□□ 0.77
CLDN3O15551 AC093458.2-201ENST00000623150 629 ntBASIC19.86■□□□□ 0.77
CLDN3O15551 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN3O15551 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN3O15551 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
CLDN3O15551 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN3O15551 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN3O15551 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CLDN3O15551 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CLDN3O15551 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.85■□□□□ 0.77
CLDN3O15551 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
CLDN3O15551 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.85■□□□□ 0.77
CLDN3O15551 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 TSSC2-201ENST00000450217 709 ntBASIC19.85■□□□□ 0.77
CLDN3O15551 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.85■□□□□ 0.77
CLDN3O15551 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.85■□□□□ 0.77
CLDN3O15551 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.85■□□□□ 0.77
CLDN3O15551 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.85■□□□□ 0.77
CLDN3O15551 AC004263.2-201ENST00000617183 678 ntBASIC19.85■□□□□ 0.77
CLDN3O15551 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.85■□□□□ 0.77
CLDN3O15551 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CLDN3O15551 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.85■□□□□ 0.77
CLDN3O15551 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.85■□□□□ 0.77
CLDN3O15551 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN3O15551 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
CLDN3O15551 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN3O15551 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.84■□□□□ 0.77
CLDN3O15551 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN3O15551 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN3O15551 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN3O15551 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN3O15551 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.84■□□□□ 0.77
CLDN3O15551 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CLDN3O15551 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN3O15551 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN3O15551 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.84■□□□□ 0.77
CLDN3O15551 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.84■□□□□ 0.77
CLDN3O15551 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.84■□□□□ 0.77
CLDN3O15551 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN3O15551 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN3O15551 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.84■□□□□ 0.77
CLDN3O15551 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN3O15551 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CLDN3O15551 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN3O15551 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CLDN3O15551 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLDN3O15551 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.83■□□□□ 0.77
CLDN3O15551 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CLDN3O15551 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.83■□□□□ 0.77
CLDN3O15551 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms