Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 AL118508.1-201ENST00000613502 2345 ntBASIC13.32□□□□□ -0.28
SMKR1H3BMG3 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 MNT-208ENST00000575394 606 ntTSL 4 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 AC133552.2-202ENST00000575694 574 ntBASIC13.32□□□□□ -0.28
SMKR1H3BMG3 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 MARS-234ENST00000630571 216 ntTSL 5 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 MARS-235ENST00000630803 183 ntTSL 3 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 AC092368.3-202ENST00000574180 1591 ntBASIC13.32□□□□□ -0.28
SMKR1H3BMG3 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
SMKR1H3BMG3 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 PHGDH-209ENST00000641074 1780 ntBASIC13.31□□□□□ -0.28
SMKR1H3BMG3 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 ABHD17AP6-201ENST00000458502 1044 ntBASIC13.31□□□□□ -0.28
SMKR1H3BMG3 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 REXO2-208ENST00000539754 791 ntTSL 2 BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 AC087623.3-201ENST00000607047 1098 ntBASIC13.31□□□□□ -0.28
SMKR1H3BMG3 AL121829.2-201ENST00000620908 328 ntBASIC13.31□□□□□ -0.28
SMKR1H3BMG3 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 LINC00602-201ENST00000629776 2065 ntBASIC13.31□□□□□ -0.28
SMKR1H3BMG3 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SMKR1H3BMG3 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms