Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COMMD3Q9UBI1 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 SERPINH1P1-201ENST00000419794 1249 ntBASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COMMD3Q9UBI1 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 HACD1-201ENST00000326961 773 ntTSL 2 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
COMMD3Q9UBI1 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
COMMD3Q9UBI1 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
COMMD3Q9UBI1 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COMMD3Q9UBI1 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.02■□□□□ 0.15
COMMD3Q9UBI1 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
COMMD3Q9UBI1 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms