Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
HPS4Q9NQG7 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
HPS4Q9NQG7 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
HPS4Q9NQG7 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 AC011840.4-201ENST00000578471 627 ntBASIC18.83■□□□□ 0.6
HPS4Q9NQG7 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.83■□□□□ 0.6
HPS4Q9NQG7 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 AL161938.1-201ENST00000569833 2180 ntBASIC18.83■□□□□ 0.6
HPS4Q9NQG7 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HPS4Q9NQG7 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 REXO1L6P-202ENST00000619970 1078 ntBASIC18.82■□□□□ 0.6
HPS4Q9NQG7 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.82■□□□□ 0.6
HPS4Q9NQG7 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 AL049812.1-201ENST00000432563 2267 ntBASIC18.81■□□□□ 0.6
HPS4Q9NQG7 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 AL022342.1-201ENST00000400363 863 ntBASIC18.81■□□□□ 0.6
HPS4Q9NQG7 TSPY12P-201ENST00000421279 868 ntBASIC18.81■□□□□ 0.6
HPS4Q9NQG7 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 SAPCD2P3-201ENST00000455031 850 ntBASIC18.81■□□□□ 0.6
HPS4Q9NQG7 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 AF238378.1-201ENST00000526806 358 ntBASIC18.81■□□□□ 0.6
HPS4Q9NQG7 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 AC083906.6-201ENST00000641366 219 ntBASIC18.81■□□□□ 0.6
HPS4Q9NQG7 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.81■□□□□ 0.6
HPS4Q9NQG7 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.8■□□□□ 0.6
HPS4Q9NQG7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HPS4Q9NQG7 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.8■□□□□ 0.6
HPS4Q9NQG7 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
HPS4Q9NQG7 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HPS4Q9NQG7 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HPS4Q9NQG7 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HPS4Q9NQG7 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms