Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
VPS13AQ96RL7 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 PMPCAP1-201ENST00000508114 1576 ntBASIC17.93■□□□□ 0.46
VPS13AQ96RL7 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 HCG4B-203ENST00000450128 991 ntBASIC17.93■□□□□ 0.46
VPS13AQ96RL7 UGT1A2P-201ENST00000454886 866 ntBASIC17.93■□□□□ 0.46
VPS13AQ96RL7 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13AQ96RL7 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 TCF3P1-201ENST00000423021 1937 ntBASIC17.92■□□□□ 0.46
VPS13AQ96RL7 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 MTMR9LP-203ENST00000426597 1545 ntBASIC17.92■□□□□ 0.46
VPS13AQ96RL7 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 AC136632.2-201ENST00000512891 861 ntBASIC17.92■□□□□ 0.46
VPS13AQ96RL7 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 AF228730.6-201ENST00000641497 218 ntBASIC17.92■□□□□ 0.46
VPS13AQ96RL7 AC084121.3-201ENST00000641716 218 ntBASIC17.92■□□□□ 0.46
VPS13AQ96RL7 AC105233.6-201ENST00000642093 218 ntBASIC17.92■□□□□ 0.46
VPS13AQ96RL7 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS13AQ96RL7 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 RN7SL204P-201ENST00000582831 262 ntBASIC17.91■□□□□ 0.46
VPS13AQ96RL7 AL008721.1-201ENST00000609964 604 ntBASIC17.91■□□□□ 0.46
VPS13AQ96RL7 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 AC006504.4-201ENST00000592118 1568 ntBASIC17.91■□□□□ 0.46
VPS13AQ96RL7 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 MIR661-201ENST00000384842 89 ntBASIC17.91■□□□□ 0.46
VPS13AQ96RL7 AC068472.1-201ENST00000474589 881 ntBASIC17.91■□□□□ 0.46
VPS13AQ96RL7 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 AL049812.1-201ENST00000432563 2267 ntBASIC17.91■□□□□ 0.46
VPS13AQ96RL7 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13AQ96RL7 FP475955.4-201ENST00000623131 1990 ntBASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms