Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VMP1Q96GC9 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 RCC2P3-201ENST00000418112 1537 ntBASIC17.47■□□□□ 0.39
VMP1Q96GC9 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VMP1Q96GC9 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VMP1Q96GC9 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VMP1Q96GC9 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
VMP1Q96GC9 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VMP1Q96GC9 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.46■□□□□ 0.39
VMP1Q96GC9 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VMP1Q96GC9 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.46■□□□□ 0.39
VMP1Q96GC9 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.46■□□□□ 0.39
VMP1Q96GC9 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VMP1Q96GC9 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VMP1Q96GC9 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.46■□□□□ 0.39
VMP1Q96GC9 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VMP1Q96GC9 AK4P3-201ENST00000418260 669 ntBASIC17.46■□□□□ 0.39
VMP1Q96GC9 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.46■□□□□ 0.39
VMP1Q96GC9 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.46■□□□□ 0.39
VMP1Q96GC9 AC009947.2-201ENST00000444014 672 ntBASIC17.46■□□□□ 0.39
VMP1Q96GC9 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VMP1Q96GC9 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.46■□□□□ 0.39
VMP1Q96GC9 NEK4P2-201ENST00000580004 1012 ntBASIC17.46■□□□□ 0.39
VMP1Q96GC9 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.46■□□□□ 0.39
VMP1Q96GC9 AC006011.2-201ENST00000621313 1158 ntBASIC17.46■□□□□ 0.39
VMP1Q96GC9 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
VMP1Q96GC9 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VMP1Q96GC9 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
VMP1Q96GC9 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
VMP1Q96GC9 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
VMP1Q96GC9 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
VMP1Q96GC9 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.45■□□□□ 0.38
VMP1Q96GC9 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.45■□□□□ 0.38
VMP1Q96GC9 AC117947.1-201ENST00000427448 529 ntBASIC17.45■□□□□ 0.38
VMP1Q96GC9 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.45■□□□□ 0.38
VMP1Q96GC9 AC104076.2-201ENST00000448912 469 ntBASIC17.45■□□□□ 0.38
VMP1Q96GC9 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 DUX4L26-201ENST00000489078 1255 ntBASIC17.45■□□□□ 0.38
VMP1Q96GC9 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.45■□□□□ 0.38
VMP1Q96GC9 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.45■□□□□ 0.38
VMP1Q96GC9 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.45■□□□□ 0.38
VMP1Q96GC9 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.45■□□□□ 0.38
VMP1Q96GC9 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.45■□□□□ 0.38
VMP1Q96GC9 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.45■□□□□ 0.38
VMP1Q96GC9 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 AL109659.2-201ENST00000606809 1674 ntBASIC17.45■□□□□ 0.38
VMP1Q96GC9 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.45■□□□□ 0.38
VMP1Q96GC9 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VMP1Q96GC9 AC036111.1-201ENST00000533973 1582 ntBASIC17.45■□□□□ 0.38
VMP1Q96GC9 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
VMP1Q96GC9 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 KRT8P32-201ENST00000512863 1461 ntBASIC17.44■□□□□ 0.38
VMP1Q96GC9 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.44■□□□□ 0.38
VMP1Q96GC9 AC099398.1-201ENST00000567919 2776 ntBASIC17.44■□□□□ 0.38
VMP1Q96GC9 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.44■□□□□ 0.38
VMP1Q96GC9 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
VMP1Q96GC9 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.44■□□□□ 0.38
VMP1Q96GC9 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.44■□□□□ 0.38
VMP1Q96GC9 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.44■□□□□ 0.38
VMP1Q96GC9 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.44■□□□□ 0.38
VMP1Q96GC9 AC140113.3-201ENST00000605663 199 ntBASIC17.44■□□□□ 0.38
VMP1Q96GC9 AC139887.4-201ENST00000607877 719 ntBASIC17.44■□□□□ 0.38
VMP1Q96GC9 AC010331.1-201ENST00000611423 582 ntBASIC17.44■□□□□ 0.38
VMP1Q96GC9 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
VMP1Q96GC9 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.44■□□□□ 0.38
VMP1Q96GC9 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VMP1Q96GC9 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms