Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 AC092647.4-201ENST00000457211 535 ntBASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHROOM3Q8TF72 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHROOM3Q8TF72 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 AL671277.2-201ENST00000458060 996 ntBASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 KRT8P47-201ENST00000604727 1398 ntBASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 AC132938.6-201ENST00000623828 1655 ntBASIC18.54■□□□□ 0.56
SHROOM3Q8TF72 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms