Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP38Q8NB14 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP38Q8NB14 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
USP38Q8NB14 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP38Q8NB14 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP38Q8NB14 Z83836.1-201ENST00000624605 1642 ntBASIC20.32■□□□□ 0.84
USP38Q8NB14 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP38Q8NB14 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.32■□□□□ 0.84
USP38Q8NB14 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
USP38Q8NB14 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.32■□□□□ 0.84
USP38Q8NB14 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.32■□□□□ 0.84
USP38Q8NB14 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.32■□□□□ 0.84
USP38Q8NB14 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.32■□□□□ 0.84
USP38Q8NB14 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.32■□□□□ 0.84
USP38Q8NB14 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP38Q8NB14 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
USP38Q8NB14 AL139424.1-201ENST00000607572 797 ntBASIC20.32■□□□□ 0.84
USP38Q8NB14 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.32■□□□□ 0.84
USP38Q8NB14 AC068587.9-201ENST00000641814 219 ntBASIC20.32■□□□□ 0.84
USP38Q8NB14 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP38Q8NB14 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.32■□□□□ 0.84
USP38Q8NB14 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP38Q8NB14 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP38Q8NB14 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP38Q8NB14 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.32■□□□□ 0.84
USP38Q8NB14 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP38Q8NB14 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.32■□□□□ 0.84
USP38Q8NB14 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP38Q8NB14 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.32■□□□□ 0.84
USP38Q8NB14 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
USP38Q8NB14 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.31■□□□□ 0.84
USP38Q8NB14 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 AL031598.1-201ENST00000561511 1773 ntBASIC20.31■□□□□ 0.84
USP38Q8NB14 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.31■□□□□ 0.84
USP38Q8NB14 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.31■□□□□ 0.84
USP38Q8NB14 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
USP38Q8NB14 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.31■□□□□ 0.84
USP38Q8NB14 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
USP38Q8NB14 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.31■□□□□ 0.84
USP38Q8NB14 RNA5SP419-201ENST00000515908 135 ntBASIC20.31■□□□□ 0.84
USP38Q8NB14 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.31■□□□□ 0.84
USP38Q8NB14 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.31■□□□□ 0.84
USP38Q8NB14 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
USP38Q8NB14 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.31■□□□□ 0.84
USP38Q8NB14 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP38Q8NB14 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
USP38Q8NB14 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
USP38Q8NB14 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
USP38Q8NB14 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.3■□□□□ 0.84
USP38Q8NB14 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.3■□□□□ 0.84
USP38Q8NB14 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.3■□□□□ 0.84
USP38Q8NB14 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
USP38Q8NB14 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.3■□□□□ 0.84
USP38Q8NB14 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.3■□□□□ 0.84
USP38Q8NB14 KRT18P58-201ENST00000527480 1120 ntBASIC20.3■□□□□ 0.84
USP38Q8NB14 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
USP38Q8NB14 AC012615.1-201ENST00000565797 1299 ntBASIC20.3■□□□□ 0.84
USP38Q8NB14 AC005332.3-201ENST00000589904 676 ntBASIC20.3■□□□□ 0.84
USP38Q8NB14 AL390719.2-201ENST00000606993 987 ntBASIC20.3■□□□□ 0.84
USP38Q8NB14 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.3■□□□□ 0.84
USP38Q8NB14 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.3■□□□□ 0.84
USP38Q8NB14 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP38Q8NB14 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
USP38Q8NB14 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms