Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 RNF126P1-202ENST00000569893 925 ntBASIC18.66■□□□□ 0.58
RTL3Q8N8U3 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 LINC00167-201ENST00000530583 1419 ntBASIC18.66■□□□□ 0.58
RTL3Q8N8U3 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
RTL3Q8N8U3 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 AC005332.3-201ENST00000589904 676 ntBASIC18.65■□□□□ 0.58
RTL3Q8N8U3 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 GPR32P1-201ENST00000601788 811 ntBASIC18.65■□□□□ 0.58
RTL3Q8N8U3 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTL3Q8N8U3 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
RTL3Q8N8U3 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RTL3Q8N8U3 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 AL390719.2-201ENST00000606993 987 ntBASIC18.64■□□□□ 0.57
RTL3Q8N8U3 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.64■□□□□ 0.57
RTL3Q8N8U3 AC004263.2-201ENST00000617183 678 ntBASIC18.64■□□□□ 0.57
RTL3Q8N8U3 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 AC020763.4-201ENST00000623414 4170 ntBASIC18.64■□□□□ 0.57
RTL3Q8N8U3 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 REXO1L9P-201ENST00000604264 2108 ntBASIC18.64■□□□□ 0.57
RTL3Q8N8U3 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RTL3Q8N8U3 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 AC132938.6-201ENST00000623828 1655 ntBASIC18.63■□□□□ 0.57
RTL3Q8N8U3 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 LINC00602-201ENST00000629776 2065 ntBASIC18.63■□□□□ 0.57
RTL3Q8N8U3 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.63■□□□□ 0.57
RTL3Q8N8U3 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms