Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP54Q70EL1 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC24.16■■□□□ 1.46
USP54Q70EL1 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP54Q70EL1 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP54Q70EL1 AC104109.2-201ENST00000602919 1418 ntBASIC24.16■■□□□ 1.46
USP54Q70EL1 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
USP54Q70EL1 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
USP54Q70EL1 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
USP54Q70EL1 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC24.15■■□□□ 1.46
USP54Q70EL1 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC24.15■■□□□ 1.46
USP54Q70EL1 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC24.15■■□□□ 1.46
USP54Q70EL1 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
USP54Q70EL1 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
USP54Q70EL1 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC24.15■■□□□ 1.46
USP54Q70EL1 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
USP54Q70EL1 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC24.15■■□□□ 1.46
USP54Q70EL1 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC24.15■■□□□ 1.46
USP54Q70EL1 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
USP54Q70EL1 PMS2P7-201ENST00000506558 1336 ntBASIC24.15■■□□□ 1.46
USP54Q70EL1 AL353593.2-201ENST00000602529 1483 ntBASIC24.15■■□□□ 1.46
USP54Q70EL1 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
USP54Q70EL1 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC24.15■■□□□ 1.46
USP54Q70EL1 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
USP54Q70EL1 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC24.15■■□□□ 1.46
USP54Q70EL1 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC24.15■■□□□ 1.46
USP54Q70EL1 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC24.15■■□□□ 1.46
USP54Q70EL1 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC24.15■■□□□ 1.46
USP54Q70EL1 AC010327.4-202ENST00000591484 748 ntBASIC24.15■■□□□ 1.46
USP54Q70EL1 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC24.14■■□□□ 1.46
USP54Q70EL1 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
USP54Q70EL1 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
USP54Q70EL1 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC24.14■■□□□ 1.46
USP54Q70EL1 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
USP54Q70EL1 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.46
USP54Q70EL1 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
USP54Q70EL1 ZNF259P1-201ENST00000407656 1365 ntBASIC24.14■■□□□ 1.45
USP54Q70EL1 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
USP54Q70EL1 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
USP54Q70EL1 KLF4P1-201ENST00000412782 1185 ntBASIC24.14■■□□□ 1.45
USP54Q70EL1 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC24.14■■□□□ 1.45
USP54Q70EL1 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC24.14■■□□□ 1.45
USP54Q70EL1 SDCCAG3P1-201ENST00000589292 1150 ntBASIC24.14■■□□□ 1.45
USP54Q70EL1 AL356488.2-201ENST00000602755 427 ntBASIC24.14■■□□□ 1.45
USP54Q70EL1 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC24.14■■□□□ 1.45
USP54Q70EL1 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC24.14■■□□□ 1.45
USP54Q70EL1 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC24.14■■□□□ 1.45
USP54Q70EL1 AC148477.5-201ENST00000625164 1645 ntBASIC24.13■■□□□ 1.45
USP54Q70EL1 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC24.13■■□□□ 1.45
USP54Q70EL1 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC24.13■■□□□ 1.45
USP54Q70EL1 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
USP54Q70EL1 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
USP54Q70EL1 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC24.13■■□□□ 1.45
USP54Q70EL1 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC24.13■■□□□ 1.45
USP54Q70EL1 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC24.13■■□□□ 1.45
USP54Q70EL1 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
USP54Q70EL1 FABP5-202ENST00000396359 986 ntTSL 5 BASIC24.13■■□□□ 1.45
USP54Q70EL1 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC24.13■■□□□ 1.45
USP54Q70EL1 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC24.13■■□□□ 1.45
USP54Q70EL1 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
USP54Q70EL1 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC24.13■■□□□ 1.45
USP54Q70EL1 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC24.13■■□□□ 1.45
USP54Q70EL1 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
USP54Q70EL1 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
USP54Q70EL1 AC073592.3-201ENST00000625118 1834 ntBASIC24.13■■□□□ 1.45
USP54Q70EL1 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC24.13■■□□□ 1.45
USP54Q70EL1 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
USP54Q70EL1 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
USP54Q70EL1 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USP54Q70EL1 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
USP54Q70EL1 ELK2BP-201ENST00000415014 1224 ntBASIC24.12■■□□□ 1.45
USP54Q70EL1 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC24.12■■□□□ 1.45
USP54Q70EL1 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC24.12■■□□□ 1.45
USP54Q70EL1 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC24.12■■□□□ 1.45
USP54Q70EL1 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
USP54Q70EL1 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
USP54Q70EL1 CROCCP3-202ENST00000420820 1947 ntBASIC24.12■■□□□ 1.45
USP54Q70EL1 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
USP54Q70EL1 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC24.12■■□□□ 1.45
USP54Q70EL1 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USP54Q70EL1 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
USP54Q70EL1 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
USP54Q70EL1 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC24.12■■□□□ 1.45
USP54Q70EL1 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP54Q70EL1 SPDYE21P-201ENST00000413323 827 ntBASIC24.11■■□□□ 1.45
USP54Q70EL1 SRP19-202ENST00000445150 833 ntTSL 2 BASIC24.11■■□□□ 1.45
USP54Q70EL1 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC24.11■■□□□ 1.45
USP54Q70EL1 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC24.11■■□□□ 1.45
USP54Q70EL1 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC24.11■■□□□ 1.45
USP54Q70EL1 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC24.11■■□□□ 1.45
USP54Q70EL1 HOTTIP_1.1-201ENST00000620415 57 ntBASIC24.11■■□□□ 1.45
USP54Q70EL1 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
USP54Q70EL1 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP54Q70EL1 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP54Q70EL1 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
USP54Q70EL1 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP54Q70EL1 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
USP54Q70EL1 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC24.11■■□□□ 1.45
USP54Q70EL1 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC24.11■■□□□ 1.45
USP54Q70EL1 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC24.11■■□□□ 1.45
USP54Q70EL1 HS6ST1P1-201ENST00000481504 1234 ntBASIC24.11■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms