Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PPP4R4Q6NUP7 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.5■□□□□ 0.39
PPP4R4Q6NUP7 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.5■□□□□ 0.39
PPP4R4Q6NUP7 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PPP4R4Q6NUP7 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PPP4R4Q6NUP7 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.5■□□□□ 0.39
PPP4R4Q6NUP7 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.5■□□□□ 0.39
PPP4R4Q6NUP7 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PPP4R4Q6NUP7 TNRC18P3-201ENST00000441896 2691 ntBASIC17.5■□□□□ 0.39
PPP4R4Q6NUP7 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.5■□□□□ 0.39
PPP4R4Q6NUP7 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PPP4R4Q6NUP7 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PPP4R4Q6NUP7 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PPP4R4Q6NUP7 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 AC108860.2-201ENST00000562760 2183 ntBASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.49■□□□□ 0.39
PPP4R4Q6NUP7 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 AL499627.1-201ENST00000569373 2188 ntBASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 KRT18P16-201ENST00000510337 1294 ntBASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 MIR4497-201ENST00000583208 89 ntBASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 CD177P1-201ENST00000606252 935 ntBASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 AC113410.3-201ENST00000623366 203 ntBASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
PPP4R4Q6NUP7 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 AL355355.2-201ENST00000442321 338 ntBASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 C1QL1P1-201ENST00000568105 661 ntBASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 AC073195.1-201ENST00000607241 877 ntBASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 HEIH-201ENST00000623091 1652 ntBASIC17.47■□□□□ 0.39
PPP4R4Q6NUP7 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms