Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
COL4A4P53420 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A4P53420 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
COL4A4P53420 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A4P53420 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A4P53420 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A4P53420 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A4P53420 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
COL4A4P53420 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
COL4A4P53420 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.41■□□□□ 0.7
COL4A4P53420 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.41■□□□□ 0.7
COL4A4P53420 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A4P53420 HLA-J-201ENST00000462773 1622 ntBASIC19.41■□□□□ 0.7
COL4A4P53420 AC009533.2-201ENST00000543664 586 ntBASIC19.41■□□□□ 0.7
COL4A4P53420 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC19.41■□□□□ 0.7
COL4A4P53420 AP005117.1-201ENST00000584346 1413 ntBASIC19.41■□□□□ 0.7
COL4A4P53420 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.41■□□□□ 0.7
COL4A4P53420 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.41■□□□□ 0.7
COL4A4P53420 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A4P53420 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A4P53420 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.41■□□□□ 0.7
COL4A4P53420 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.41■□□□□ 0.7
COL4A4P53420 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
COL4A4P53420 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A4P53420 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A4P53420 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
COL4A4P53420 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A4P53420 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A4P53420 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
COL4A4P53420 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A4P53420 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A4P53420 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.4■□□□□ 0.7
COL4A4P53420 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.4■□□□□ 0.7
COL4A4P53420 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A4P53420 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.4■□□□□ 0.7
COL4A4P53420 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC19.4■□□□□ 0.7
COL4A4P53420 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
COL4A4P53420 AC098818.2-201ENST00000564925 2320 ntBASIC19.4■□□□□ 0.7
COL4A4P53420 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL4A4P53420 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A4P53420 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
COL4A4P53420 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A4P53420 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A4P53420 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A4P53420 AP002414.3-201ENST00000589352 1468 ntBASIC19.4■□□□□ 0.7
COL4A4P53420 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A4P53420 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL4A4P53420 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A4P53420 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.4■□□□□ 0.7
COL4A4P53420 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
COL4A4P53420 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A4P53420 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A4P53420 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.4■□□□□ 0.7
COL4A4P53420 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A4P53420 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A4P53420 AP000974.1-201ENST00000623909 2387 ntBASIC19.39■□□□□ 0.7
COL4A4P53420 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
COL4A4P53420 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A4P53420 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
COL4A4P53420 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A4P53420 AC093503.3-201ENST00000624917 2352 ntBASIC19.39■□□□□ 0.69
COL4A4P53420 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
COL4A4P53420 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.39■□□□□ 0.69
COL4A4P53420 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.39■□□□□ 0.69
COL4A4P53420 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.39■□□□□ 0.69
COL4A4P53420 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC19.39■□□□□ 0.69
COL4A4P53420 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.39■□□□□ 0.69
COL4A4P53420 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.39■□□□□ 0.69
COL4A4P53420 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.39■□□□□ 0.69
COL4A4P53420 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A4P53420 AL499627.1-201ENST00000569373 2188 ntBASIC19.38■□□□□ 0.69
COL4A4P53420 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A4P53420 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A4P53420 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A4P53420 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.38■□□□□ 0.69
COL4A4P53420 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.38■□□□□ 0.69
COL4A4P53420 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A4P53420 ABCD1P5-201ENST00000445663 754 ntBASIC19.38■□□□□ 0.69
COL4A4P53420 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
COL4A4P53420 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.38■□□□□ 0.69
COL4A4P53420 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.38■□□□□ 0.69
COL4A4P53420 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.38■□□□□ 0.69
COL4A4P53420 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A4P53420 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A4P53420 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A4P53420 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
COL4A4P53420 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.38■□□□□ 0.69
COL4A4P53420 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A4P53420 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A4P53420 LBH-203ENST00000404397 543 ntTSL 4 BASIC19.37■□□□□ 0.69
COL4A4P53420 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.37■□□□□ 0.69
COL4A4P53420 AC112482.1-201ENST00000492080 688 ntBASIC19.37■□□□□ 0.69
COL4A4P53420 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.37■□□□□ 0.69
COL4A4P53420 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.37■□□□□ 0.69
COL4A4P53420 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.37■□□□□ 0.69
COL4A4P53420 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.37■□□□□ 0.69
COL4A4P53420 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A4P53420 MIR3687-2-201ENST00000577708 61 ntBASIC19.37■□□□□ 0.69
COL4A4P53420 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.37■□□□□ 0.69
COL4A4P53420 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms