Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.07■□□□□ 0.48
CXCL12P48061 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
CXCL12P48061 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.07■□□□□ 0.48
CXCL12P48061 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.07■□□□□ 0.48
CXCL12P48061 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.07■□□□□ 0.48
CXCL12P48061 AC112698.1-201ENST00000510299 916 ntBASIC18.07■□□□□ 0.48
CXCL12P48061 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.07■□□□□ 0.48
CXCL12P48061 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.07■□□□□ 0.48
CXCL12P48061 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.07■□□□□ 0.48
CXCL12P48061 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.07■□□□□ 0.48
CXCL12P48061 AC005593.1-201ENST00000624894 515 ntBASIC18.07■□□□□ 0.48
CXCL12P48061 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CXCL12P48061 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.07■□□□□ 0.48
CXCL12P48061 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.07■□□□□ 0.48
CXCL12P48061 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CXCL12P48061 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
CXCL12P48061 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL12P48061 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CXCL12P48061 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL12P48061 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL12P48061 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL12P48061 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.06■□□□□ 0.48
CXCL12P48061 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
CXCL12P48061 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL12P48061 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.06■□□□□ 0.48
CXCL12P48061 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CXCL12P48061 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CXCL12P48061 AP006288.1-201ENST00000446065 395 ntBASIC18.06■□□□□ 0.48
CXCL12P48061 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL12P48061 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.06■□□□□ 0.48
CXCL12P48061 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.06■□□□□ 0.48
CXCL12P48061 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL12P48061 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.06■□□□□ 0.48
CXCL12P48061 AL596442.2-201ENST00000610240 980 ntBASIC18.06■□□□□ 0.48
CXCL12P48061 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.06■□□□□ 0.48
CXCL12P48061 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CXCL12P48061 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL12P48061 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
CXCL12P48061 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL12P48061 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL12P48061 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL12P48061 AL032819.2-201ENST00000624543 2162 ntBASIC18.06■□□□□ 0.48
CXCL12P48061 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CXCL12P48061 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CXCL12P48061 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CXCL12P48061 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CXCL12P48061 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.05■□□□□ 0.48
CXCL12P48061 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.05■□□□□ 0.48
CXCL12P48061 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
CXCL12P48061 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.05■□□□□ 0.48
CXCL12P48061 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CXCL12P48061 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.05■□□□□ 0.48
CXCL12P48061 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CXCL12P48061 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CXCL12P48061 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.05■□□□□ 0.48
CXCL12P48061 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CXCL12P48061 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.05■□□□□ 0.48
CXCL12P48061 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.05■□□□□ 0.48
CXCL12P48061 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.05■□□□□ 0.48
CXCL12P48061 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
CXCL12P48061 AC064836.3-201ENST00000607928 673 ntBASIC18.05■□□□□ 0.48
CXCL12P48061 AL022326.1-202ENST00000641533 845 ntBASIC18.05■□□□□ 0.48
CXCL12P48061 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CXCL12P48061 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CXCL12P48061 PCDHAC2-203ENST00000615316 3011 ntBASIC18.05■□□□□ 0.48
CXCL12P48061 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CXCL12P48061 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CXCL12P48061 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CXCL12P48061 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CXCL12P48061 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CXCL12P48061 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CXCL12P48061 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CXCL12P48061 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CXCL12P48061 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CXCL12P48061 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.05■□□□□ 0.48
CXCL12P48061 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CXCL12P48061 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.04■□□□□ 0.48
CXCL12P48061 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CXCL12P48061 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.04■□□□□ 0.48
CXCL12P48061 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CXCL12P48061 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.04■□□□□ 0.48
CXCL12P48061 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.04■□□□□ 0.48
CXCL12P48061 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.04■□□□□ 0.48
CXCL12P48061 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
CXCL12P48061 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.04■□□□□ 0.48
CXCL12P48061 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CXCL12P48061 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms