Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ZNF815P-204ENST00000434898 1737 ntBASIC14.89□□□□□ -0.03
CDX1P47902 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDX1P47902 AC126763.1-201ENST00000552015 2118 ntBASIC14.89□□□□□ -0.03
CDX1P47902 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
CDX1P47902 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC14.89□□□□□ -0.03
CDX1P47902 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CDX1P47902 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC14.88□□□□□ -0.03
CDX1P47902 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.88□□□□□ -0.03
CDX1P47902 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
CDX1P47902 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.88□□□□□ -0.03
CDX1P47902 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CDX1P47902 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC14.88□□□□□ -0.03
CDX1P47902 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
CDX1P47902 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CDX1P47902 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CDX1P47902 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 SLC25A1P2-201ENST00000430693 912 ntBASIC14.88□□□□□ -0.03
CDX1P47902 CCR12P-201ENST00000446203 998 ntBASIC14.88□□□□□ -0.03
CDX1P47902 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC14.88□□□□□ -0.03
CDX1P47902 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC14.88□□□□□ -0.03
CDX1P47902 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CDX1P47902 PPOX-219ENST00000544598 813 ntTSL 2 BASIC14.88□□□□□ -0.03
CDX1P47902 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CDX1P47902 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
CDX1P47902 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CDX1P47902 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
CDX1P47902 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CDX1P47902 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CDX1P47902 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC14.88□□□□□ -0.03
CDX1P47902 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC14.88□□□□□ -0.03
CDX1P47902 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 AC104417.2-201ENST00000562989 1793 ntBASIC14.88□□□□□ -0.03
CDX1P47902 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDX1P47902 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC14.87□□□□□ -0.03
CDX1P47902 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CDX1P47902 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC14.87□□□□□ -0.03
CDX1P47902 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
CDX1P47902 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CDX1P47902 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC14.87□□□□□ -0.03
CDX1P47902 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC14.87□□□□□ -0.03
CDX1P47902 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC14.87□□□□□ -0.03
CDX1P47902 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC14.87□□□□□ -0.03
CDX1P47902 PRR31-201ENST00000371629 978 ntTSL 2 BASIC14.87□□□□□ -0.03
CDX1P47902 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC14.87□□□□□ -0.03
CDX1P47902 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 CA15P1-201ENST00000481698 905 ntBASIC14.87□□□□□ -0.03
CDX1P47902 FDX2-206ENST00000492239 773 ntTSL 2 BASIC14.87□□□□□ -0.03
CDX1P47902 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC14.87□□□□□ -0.03
CDX1P47902 PRSS44-201ENST00000515154 1146 ntBASIC14.87□□□□□ -0.03
CDX1P47902 CKBP1-201ENST00000565489 1086 ntBASIC14.87□□□□□ -0.03
CDX1P47902 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
CDX1P47902 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
CDX1P47902 AC116562.4-202ENST00000641738 218 ntBASIC14.87□□□□□ -0.03
CDX1P47902 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC14.87□□□□□ -0.03
CDX1P47902 AC080080.1-201ENST00000625121 2420 ntBASIC14.87□□□□□ -0.03
CDX1P47902 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CDX1P47902 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 TPR-209ENST00000613151 2478 ntTSL 5 BASIC14.87□□□□□ -0.03
CDX1P47902 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC14.87□□□□□ -0.03
CDX1P47902 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CDX1P47902 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms