Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 AL513477.1-201ENST00000602865 2407 ntBASIC13.73□□□□□ -0.21
HLA-DQA1P01909 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 LINC01126-201ENST00000623515 1646 ntBASIC13.72□□□□□ -0.21
HLA-DQA1P01909 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 TFG-210ENST00000620299 1289 ntTSL 5 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 DOC2GP-204ENST00000639052 2548 ntBASIC13.72□□□□□ -0.21
HLA-DQA1P01909 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 PCDH8P1-201ENST00000428983 2773 ntBASIC13.72□□□□□ -0.21
HLA-DQA1P01909 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 NFYC-AS1-201ENST00000606277 1687 ntBASIC13.72□□□□□ -0.21
HLA-DQA1P01909 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 KRT8P45-201ENST00000414328 1447 ntBASIC13.72□□□□□ -0.21
HLA-DQA1P01909 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DQA1P01909 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 ME3-201ENST00000323418 1068 ntTSL 5 BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 KRT18P68-201ENST00000392293 1000 ntBASIC13.71□□□□□ -0.21
HLA-DQA1P01909 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 IKBKGP1-201ENST00000612193 1073 ntBASIC13.71□□□□□ -0.21
HLA-DQA1P01909 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 GAS2L1P1-201ENST00000420145 1480 ntBASIC13.71□□□□□ -0.21
HLA-DQA1P01909 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DQA1P01909 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms