Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC28.27■■■□□ 2.12
PCF11O94913 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC28.27■■■□□ 2.12
PCF11O94913 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC28.27■■■□□ 2.12
PCF11O94913 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCF11O94913 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC28.27■■■□□ 2.12
PCF11O94913 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCF11O94913 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.12
PCF11O94913 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
PCF11O94913 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC28.26■■■□□ 2.11
PCF11O94913 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
PCF11O94913 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
PCF11O94913 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC28.26■■■□□ 2.11
PCF11O94913 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
PCF11O94913 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
PCF11O94913 ABCD1P5-201ENST00000445663 754 ntBASIC28.26■■■□□ 2.11
PCF11O94913 SCARNA2-201ENST00000458748 420 ntBASIC28.26■■■□□ 2.11
PCF11O94913 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC28.26■■■□□ 2.11
PCF11O94913 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC28.26■■■□□ 2.11
PCF11O94913 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
PCF11O94913 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
PCF11O94913 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
PCF11O94913 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
PCF11O94913 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCF11O94913 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC28.25■■■□□ 2.11
PCF11O94913 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
PCF11O94913 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC28.25■■■□□ 2.11
PCF11O94913 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC28.25■■■□□ 2.11
PCF11O94913 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC28.25■■■□□ 2.11
PCF11O94913 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC28.25■■■□□ 2.11
PCF11O94913 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC28.25■■■□□ 2.11
PCF11O94913 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCF11O94913 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
PCF11O94913 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC28.25■■■□□ 2.11
PCF11O94913 AP005117.1-201ENST00000584346 1413 ntBASIC28.25■■■□□ 2.11
PCF11O94913 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC28.25■■■□□ 2.11
PCF11O94913 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
PCF11O94913 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCF11O94913 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCF11O94913 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCF11O94913 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCF11O94913 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCF11O94913 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCF11O94913 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCF11O94913 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
PCF11O94913 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
PCF11O94913 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC28.24■■■□□ 2.11
PCF11O94913 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
PCF11O94913 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
PCF11O94913 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
PCF11O94913 RPL18-209ENST00000550645 463 ntTSL 5 BASIC28.24■■■□□ 2.11
PCF11O94913 RPL18-214ENST00000552588 559 ntTSL 3 BASIC28.24■■■□□ 2.11
PCF11O94913 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC28.24■■■□□ 2.11
PCF11O94913 AC021087.4-201ENST00000563761 564 ntBASIC28.24■■■□□ 2.11
PCF11O94913 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
PCF11O94913 MTDHP3-201ENST00000594186 672 ntBASIC28.24■■■□□ 2.11
PCF11O94913 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC28.24■■■□□ 2.11
PCF11O94913 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
PCF11O94913 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
PCF11O94913 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC28.24■■■□□ 2.11
PCF11O94913 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
PCF11O94913 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
PCF11O94913 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC28.24■■■□□ 2.11
PCF11O94913 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC28.24■■■□□ 2.11
PCF11O94913 PMS2P7-201ENST00000506558 1336 ntBASIC28.24■■■□□ 2.11
PCF11O94913 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
PCF11O94913 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC28.24■■■□□ 2.11
PCF11O94913 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
PCF11O94913 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC28.23■■■□□ 2.11
PCF11O94913 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC28.23■■■□□ 2.11
PCF11O94913 AC073592.3-201ENST00000625118 1834 ntBASIC28.23■■■□□ 2.11
PCF11O94913 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
PCF11O94913 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
PCF11O94913 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC28.23■■■□□ 2.11
PCF11O94913 CSF3-203ENST00000394148 622 ntTSL 3 BASIC28.23■■■□□ 2.11
PCF11O94913 CTNS-203ENST00000399306 803 ntTSL 3 BASIC28.23■■■□□ 2.11
PCF11O94913 AC012640.2-201ENST00000561606 901 ntBASIC28.23■■■□□ 2.11
PCF11O94913 AC139887.3-201ENST00000568585 713 ntBASIC28.23■■■□□ 2.11
PCF11O94913 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC28.23■■■□□ 2.11
PCF11O94913 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
PCF11O94913 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC28.23■■■□□ 2.11
PCF11O94913 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
PCF11O94913 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
PCF11O94913 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
PCF11O94913 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
PCF11O94913 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
PCF11O94913 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC28.22■■■□□ 2.11
PCF11O94913 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC28.22■■■□□ 2.11
PCF11O94913 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
PCF11O94913 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC28.22■■■□□ 2.11
PCF11O94913 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC28.22■■■□□ 2.11
PCF11O94913 PNMT-203ENST00000581428 677 ntTSL 2 BASIC28.22■■■□□ 2.11
PCF11O94913 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC28.22■■■□□ 2.11
PCF11O94913 FAM215A-202ENST00000632077 792 ntBASIC28.22■■■□□ 2.11
PCF11O94913 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC28.22■■■□□ 2.11
PCF11O94913 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC28.22■■■□□ 2.11
PCF11O94913 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
PCF11O94913 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC28.22■■■□□ 2.11
PCF11O94913 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
PCF11O94913 PHGDH-209ENST00000641074 1780 ntBASIC28.21■■■□□ 2.11
PCF11O94913 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms