Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PRPF40AO75400 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC21.21■□□□□ 0.99
PRPF40AO75400 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC21.21■□□□□ 0.99
PRPF40AO75400 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF40AO75400 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF40AO75400 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF40AO75400 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
PRPF40AO75400 AD000864.1-201ENST00000624076 2295 ntBASIC21.21■□□□□ 0.99
PRPF40AO75400 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC21.21■□□□□ 0.99
PRPF40AO75400 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF40AO75400 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF40AO75400 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF40AO75400 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF40AO75400 KRT16P5-201ENST00000455284 522 ntBASIC21.21■□□□□ 0.99
PRPF40AO75400 AC091390.4-202ENST00000476426 537 ntBASIC21.21■□□□□ 0.99
PRPF40AO75400 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.21■□□□□ 0.99
PRPF40AO75400 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.21■□□□□ 0.99
PRPF40AO75400 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.21■□□□□ 0.99
PRPF40AO75400 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.21■□□□□ 0.99
PRPF40AO75400 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.21■□□□□ 0.99
PRPF40AO75400 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.21■□□□□ 0.99
PRPF40AO75400 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF40AO75400 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
PRPF40AO75400 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
PRPF40AO75400 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF40AO75400 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF40AO75400 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.21■□□□□ 0.99
PRPF40AO75400 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21.21■□□□□ 0.99
PRPF40AO75400 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.21■□□□□ 0.99
PRPF40AO75400 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF40AO75400 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC21.21■□□□□ 0.99
PRPF40AO75400 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF40AO75400 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF40AO75400 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PRPF40AO75400 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.99
PRPF40AO75400 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
PRPF40AO75400 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC21.2■□□□□ 0.98
PRPF40AO75400 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF40AO75400 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF40AO75400 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.2■□□□□ 0.98
PRPF40AO75400 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
PRPF40AO75400 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
PRPF40AO75400 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF40AO75400 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
PRPF40AO75400 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF40AO75400 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC21.2■□□□□ 0.98
PRPF40AO75400 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC21.2■□□□□ 0.98
PRPF40AO75400 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF40AO75400 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
PRPF40AO75400 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF40AO75400 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
PRPF40AO75400 AC131212.4-201ENST00000623606 975 ntBASIC21.2■□□□□ 0.98
PRPF40AO75400 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC21.2■□□□□ 0.98
PRPF40AO75400 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC21.2■□□□□ 0.98
PRPF40AO75400 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF40AO75400 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF40AO75400 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
PRPF40AO75400 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF40AO75400 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF40AO75400 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.2■□□□□ 0.98
PRPF40AO75400 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.2■□□□□ 0.98
PRPF40AO75400 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.2■□□□□ 0.98
PRPF40AO75400 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF40AO75400 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC21.2■□□□□ 0.98
PRPF40AO75400 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC21.2■□□□□ 0.98
PRPF40AO75400 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF40AO75400 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.2■□□□□ 0.98
PRPF40AO75400 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PRPF40AO75400 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.2■□□□□ 0.98
PRPF40AO75400 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF40AO75400 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.19■□□□□ 0.98
PRPF40AO75400 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF40AO75400 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF40AO75400 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF40AO75400 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF40AO75400 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC21.19■□□□□ 0.98
PRPF40AO75400 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PRPF40AO75400 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF40AO75400 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF40AO75400 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PRPF40AO75400 HARS-201ENST00000307633 1780 ntTSL 2 BASIC21.19■□□□□ 0.98
PRPF40AO75400 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF40AO75400 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
PRPF40AO75400 AC004980.1-204ENST00000429707 299 ntBASIC21.19■□□□□ 0.98
PRPF40AO75400 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.19■□□□□ 0.98
PRPF40AO75400 RPS2P4-201ENST00000476944 856 ntBASIC21.19■□□□□ 0.98
PRPF40AO75400 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC21.19■□□□□ 0.98
PRPF40AO75400 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF40AO75400 AL445675.2-201ENST00000620291 557 ntBASIC21.19■□□□□ 0.98
PRPF40AO75400 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF40AO75400 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC21.19■□□□□ 0.98
PRPF40AO75400 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PRPF40AO75400 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
PRPF40AO75400 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.19■□□□□ 0.98
PRPF40AO75400 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF40AO75400 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PRPF40AO75400 OR6D1P-202ENST00000641007 5290 ntBASIC21.19■□□□□ 0.98
PRPF40AO75400 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
PRPF40AO75400 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC21.19■□□□□ 0.98
PRPF40AO75400 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms