Protein–RNA interactions for Protein: O43395

PRPF3, U4/U6 small nuclear ribonucleoprotein Prp3, humanhuman

Known RBP Predictions only

Length 683 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3O43395 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRPF3O43395 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRPF3O43395 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRPF3O43395 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PRPF3O43395 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.96■□□□□ 0.95
PRPF3O43395 AC005332.3-201ENST00000589904 676 ntBASIC20.96■□□□□ 0.95
PRPF3O43395 AC010331.1-201ENST00000611423 582 ntBASIC20.96■□□□□ 0.95
PRPF3O43395 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.96■□□□□ 0.95
PRPF3O43395 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.96■□□□□ 0.95
PRPF3O43395 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PRPF3O43395 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PRPF3O43395 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.96■□□□□ 0.95
PRPF3O43395 NOC2LP1-202ENST00000452600 2235 ntBASIC20.96■□□□□ 0.95
PRPF3O43395 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.96■□□□□ 0.95
PRPF3O43395 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.96■□□□□ 0.95
PRPF3O43395 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
PRPF3O43395 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PRPF3O43395 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
PRPF3O43395 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.95■□□□□ 0.94
PRPF3O43395 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PRPF3O43395 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.95■□□□□ 0.94
PRPF3O43395 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PRPF3O43395 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PRPF3O43395 MIR1224-201ENST00000408193 85 ntBASIC20.95■□□□□ 0.94
PRPF3O43395 AL645929.1-201ENST00000420084 975 ntBASIC20.95■□□□□ 0.94
PRPF3O43395 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.95■□□□□ 0.94
PRPF3O43395 KRT18P35-201ENST00000510488 1269 ntBASIC20.95■□□□□ 0.94
PRPF3O43395 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PRPF3O43395 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
PRPF3O43395 GPR32P1-201ENST00000601788 811 ntBASIC20.95■□□□□ 0.94
PRPF3O43395 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.95■□□□□ 0.94
PRPF3O43395 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.95■□□□□ 0.94
PRPF3O43395 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PRPF3O43395 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
PRPF3O43395 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.95■□□□□ 0.94
PRPF3O43395 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PRPF3O43395 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PRPF3O43395 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PRPF3O43395 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
PRPF3O43395 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.94■□□□□ 0.94
PRPF3O43395 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PRPF3O43395 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
PRPF3O43395 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PRPF3O43395 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PRPF3O43395 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PRPF3O43395 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.94■□□□□ 0.94
PRPF3O43395 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.94■□□□□ 0.94
PRPF3O43395 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PRPF3O43395 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.94■□□□□ 0.94
PRPF3O43395 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.94■□□□□ 0.94
PRPF3O43395 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
PRPF3O43395 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.94■□□□□ 0.94
PRPF3O43395 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.94■□□□□ 0.94
PRPF3O43395 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.94■□□□□ 0.94
PRPF3O43395 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.94■□□□□ 0.94
PRPF3O43395 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.94■□□□□ 0.94
PRPF3O43395 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.94■□□□□ 0.94
PRPF3O43395 AL390719.2-201ENST00000606993 987 ntBASIC20.94■□□□□ 0.94
PRPF3O43395 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PRPF3O43395 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PRPF3O43395 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.94■□□□□ 0.94
PRPF3O43395 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
PRPF3O43395 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PRPF3O43395 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PRPF3O43395 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.94■□□□□ 0.94
PRPF3O43395 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PRPF3O43395 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF3O43395 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF3O43395 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
PRPF3O43395 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF3O43395 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF3O43395 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF3O43395 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF3O43395 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
PRPF3O43395 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF3O43395 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
PRPF3O43395 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF3O43395 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF3O43395 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF3O43395 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.93■□□□□ 0.94
PRPF3O43395 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
PRPF3O43395 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PRPF3O43395 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.93■□□□□ 0.94
PRPF3O43395 AC087388.1-201ENST00000571370 1112 ntBASIC20.93■□□□□ 0.94
PRPF3O43395 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.93■□□□□ 0.94
PRPF3O43395 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.93■□□□□ 0.94
PRPF3O43395 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.93■□□□□ 0.94
PRPF3O43395 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF3O43395 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
PRPF3O43395 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.93■□□□□ 0.94
PRPF3O43395 AC005332.1-201ENST00000577698 1310 ntBASIC20.93■□□□□ 0.94
PRPF3O43395 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF3O43395 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.93■□□□□ 0.94
PRPF3O43395 AL353692.3-201ENST00000407031 1396 ntBASIC20.93■□□□□ 0.94
PRPF3O43395 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.93■□□□□ 0.94
PRPF3O43395 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.93■□□□□ 0.94
PRPF3O43395 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF3O43395 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.93■□□□□ 0.94
PRPF3O43395 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF3O43395 AP000997.3-201ENST00000623333 2250 ntBASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms