Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC31■■■□□ 2.55
CUX2O14529 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CUX2O14529 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC31■■■□□ 2.55
CUX2O14529 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC31■■■□□ 2.55
CUX2O14529 AC022145.2-201ENST00000598203 171 ntBASIC31■■■□□ 2.55
CUX2O14529 AC073592.4-201ENST00000623827 446 ntBASIC31■■■□□ 2.55
CUX2O14529 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CUX2O14529 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC30.99■■■□□ 2.55
CUX2O14529 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CUX2O14529 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC30.99■■■□□ 2.55
CUX2O14529 COX5BP8-201ENST00000416911 349 ntBASIC30.99■■■□□ 2.55
CUX2O14529 ARSEP1-201ENST00000420443 635 ntBASIC30.99■■■□□ 2.55
CUX2O14529 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC30.99■■■□□ 2.55
CUX2O14529 SRP19-202ENST00000445150 833 ntTSL 2 BASIC30.99■■■□□ 2.55
CUX2O14529 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
CUX2O14529 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CUX2O14529 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CUX2O14529 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CUX2O14529 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC30.99■■■□□ 2.55
CUX2O14529 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC30.98■■■□□ 2.55
CUX2O14529 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC30.98■■■□□ 2.55
CUX2O14529 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC30.98■■■□□ 2.55
CUX2O14529 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC30.98■■■□□ 2.55
CUX2O14529 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CUX2O14529 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CUX2O14529 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CUX2O14529 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC30.98■■■□□ 2.55
CUX2O14529 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC30.98■■■□□ 2.55
CUX2O14529 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC30.98■■■□□ 2.55
CUX2O14529 MIR6799-201ENST00000620297 69 ntBASIC30.98■■■□□ 2.55
CUX2O14529 AC009093.7-201ENST00000623853 1223 ntBASIC30.98■■■□□ 2.55
CUX2O14529 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CUX2O14529 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CUX2O14529 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
CUX2O14529 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CUX2O14529 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CUX2O14529 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC30.98■■■□□ 2.55
CUX2O14529 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC30.98■■■□□ 2.55
CUX2O14529 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC30.97■■■□□ 2.55
CUX2O14529 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
CUX2O14529 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC30.97■■■□□ 2.55
CUX2O14529 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC30.97■■■□□ 2.55
CUX2O14529 IGLL3P-201ENST00000412472 434 ntBASIC30.97■■■□□ 2.55
CUX2O14529 BASP1P1-201ENST00000430708 665 ntBASIC30.97■■■□□ 2.55
CUX2O14529 BX005266.1-201ENST00000473402 457 ntBASIC30.97■■■□□ 2.55
CUX2O14529 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC30.97■■■□□ 2.55
CUX2O14529 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC30.97■■■□□ 2.55
CUX2O14529 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC30.97■■■□□ 2.55
CUX2O14529 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC30.97■■■□□ 2.55
CUX2O14529 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC30.97■■■□□ 2.55
CUX2O14529 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
CUX2O14529 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
CUX2O14529 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
CUX2O14529 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CUX2O14529 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CUX2O14529 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC30.96■■■□□ 2.55
CUX2O14529 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC30.96■■■□□ 2.55
CUX2O14529 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CUX2O14529 AC091812.2-201ENST00000619081 385 ntBASIC30.96■■■□□ 2.55
CUX2O14529 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CUX2O14529 AL357033.4-201ENST00000617703 1807 ntBASIC30.96■■■□□ 2.55
CUX2O14529 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CUX2O14529 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC30.96■■■□□ 2.55
CUX2O14529 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CUX2O14529 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC30.96■■■□□ 2.55
CUX2O14529 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CUX2O14529 PWWP2AP1-201ENST00000429776 2273 ntBASIC30.96■■■□□ 2.55
CUX2O14529 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC30.96■■■□□ 2.55
CUX2O14529 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC30.96■■■□□ 2.55
CUX2O14529 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CUX2O14529 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC30.96■■■□□ 2.55
CUX2O14529 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC30.95■■■□□ 2.55
CUX2O14529 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC30.95■■■□□ 2.55
CUX2O14529 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC30.95■■■□□ 2.55
CUX2O14529 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC30.95■■■□□ 2.55
CUX2O14529 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC30.95■■■□□ 2.55
CUX2O14529 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.55
CUX2O14529 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC30.95■■■□□ 2.55
CUX2O14529 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC30.95■■■□□ 2.55
CUX2O14529 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
CUX2O14529 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC30.95■■■□□ 2.55
CUX2O14529 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
CUX2O14529 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC30.95■■■□□ 2.55
CUX2O14529 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
CUX2O14529 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
CUX2O14529 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
CUX2O14529 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC30.95■■■□□ 2.54
CUX2O14529 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC30.95■■■□□ 2.54
CUX2O14529 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC30.95■■■□□ 2.54
CUX2O14529 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC30.95■■■□□ 2.54
CUX2O14529 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC30.95■■■□□ 2.54
CUX2O14529 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC30.95■■■□□ 2.54
CUX2O14529 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.94■■■□□ 2.54
CUX2O14529 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CUX2O14529 AC112907.3-201ENST00000577781 2400 ntBASIC30.94■■■□□ 2.54
CUX2O14529 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC30.94■■■□□ 2.54
CUX2O14529 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CUX2O14529 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CUX2O14529 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC30.94■■■□□ 2.54
CUX2O14529 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms