Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.36■□□□□ 0.21
COL6A6A6NMZ7 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A6A6NMZ7 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A6A6NMZ7 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A6A6NMZ7 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A6A6NMZ7 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.36■□□□□ 0.21
COL6A6A6NMZ7 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.36■□□□□ 0.21
COL6A6A6NMZ7 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.36■□□□□ 0.21
COL6A6A6NMZ7 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A6A6NMZ7 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.36■□□□□ 0.21
COL6A6A6NMZ7 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
COL6A6A6NMZ7 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A6A6NMZ7 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A6A6NMZ7 HTR7P1-202ENST00000624664 4411 ntBASIC16.36■□□□□ 0.21
COL6A6A6NMZ7 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 AC073621.1-201ENST00000392730 636 ntBASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 CRYGEP-201ENST00000412192 528 ntBASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 AC093214.1-201ENST00000511688 1107 ntBASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 TP73-202ENST00000354437 2140 ntTSL 5 BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 USP39-204ENST00000409766 2033 ntTSL 2 BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 AC069262.1-201ENST00000539058 672 ntBASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 AC125634.1-201ENST00000438758 1403 ntBASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A6A6NMZ7 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 CEND1P1-201ENST00000451006 455 ntBASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 KRT8P32-201ENST00000512863 1461 ntBASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 AC004817.3-201ENST00000602957 2129 ntBASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A6A6NMZ7 HEIH-201ENST00000623091 1652 ntBASIC16.33■□□□□ 0.21
COL6A6A6NMZ7 USP48-205ENST00000421625 2818 ntTSL 2 BASIC16.33■□□□□ 0.21
COL6A6A6NMZ7 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL6A6A6NMZ7 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms