Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 BNIP3P18-201ENST00000593976 575 ntBASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMIM28A0A1B0GU29 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 AL138781.2-201ENST00000617896 1843 ntBASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SMIM28A0A1B0GU29 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 AC004408.2-201ENST00000623613 2777 ntBASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 POM121L3P-201ENST00000419331 1163 ntBASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 KRT16P4-201ENST00000453883 522 ntBASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 EMBP1-201ENST00000458200 901 ntBASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMIM28A0A1B0GU29 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 AC004870.1-201ENST00000315132 882 ntBASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 NUS1P2-201ENST00000417358 873 ntBASIC19.45■□□□□ 0.7
SMIM28A0A1B0GU29 AC026396.1-201ENST00000419388 421 ntBASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms