Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 UPF3AP3-201ENST00000420996 769 ntBASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 AC021087.4-201ENST00000563761 564 ntBASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA1Q9Y5H4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 MED15P5-201ENST00000423150 992 ntBASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 ABCD1P5-201ENST00000445663 754 ntBASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 AC009102.3-201ENST00000623118 1491 ntBASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA1Q9Y5H4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 AC140113.2-201ENST00000604370 208 ntBASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA1Q9Y5H4 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 DNAJB3-201ENST00000446806 729 ntBASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 AL356488.2-201ENST00000602755 427 ntBASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms