Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.69■□□□□ 0.42
VPS4AQ9UN37 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 FAM86EP-206ENST00000510506 987 ntBASIC17.69■□□□□ 0.42
VPS4AQ9UN37 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 AL162741.1-201ENST00000565563 1558 ntBASIC17.69■□□□□ 0.42
VPS4AQ9UN37 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS4AQ9UN37 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 SLC25A1P2-201ENST00000430693 912 ntBASIC17.68■□□□□ 0.42
VPS4AQ9UN37 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 AP000692.2-201ENST00000608391 879 ntBASIC17.68■□□□□ 0.42
VPS4AQ9UN37 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 AC010653.2-201ENST00000623505 997 ntBASIC17.68■□□□□ 0.42
VPS4AQ9UN37 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 OR6D1P-202ENST00000641007 5290 ntBASIC17.68■□□□□ 0.42
VPS4AQ9UN37 LTB4R2-202ENST00000528054 3092 ntBASIC17.68■□□□□ 0.42
VPS4AQ9UN37 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4AQ9UN37 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 AC140113.3-201ENST00000605663 199 ntBASIC17.67■□□□□ 0.42
VPS4AQ9UN37 AC011298.2-201ENST00000617989 482 ntBASIC17.67■□□□□ 0.42
VPS4AQ9UN37 AC130371.2-201ENST00000619443 611 ntBASIC17.67■□□□□ 0.42
VPS4AQ9UN37 AC141257.4-201ENST00000634557 245 ntBASIC17.67■□□□□ 0.42
VPS4AQ9UN37 AC136944.6-201ENST00000634818 245 ntBASIC17.67■□□□□ 0.42
VPS4AQ9UN37 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 AL499627.1-201ENST00000569373 2188 ntBASIC17.67■□□□□ 0.42
VPS4AQ9UN37 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 318.9 ms