Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 AC112497.1-201ENST00000624824 639 ntBASIC18.8■□□□□ 0.6
USP29Q9HBJ7 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 LINC01126-201ENST00000623515 1646 ntBASIC18.8■□□□□ 0.6
USP29Q9HBJ7 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 FLJ13224-201ENST00000313737 1514 ntBASIC18.79■□□□□ 0.6
USP29Q9HBJ7 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 TSPY5P-201ENST00000426936 936 ntBASIC18.79■□□□□ 0.6
USP29Q9HBJ7 AC092647.4-201ENST00000457211 535 ntBASIC18.79■□□□□ 0.6
USP29Q9HBJ7 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 AC139887.4-201ENST00000607877 719 ntBASIC18.79■□□□□ 0.6
USP29Q9HBJ7 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.79■□□□□ 0.6
USP29Q9HBJ7 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 YBX1P2-201ENST00000489612 999 ntBASIC18.78■□□□□ 0.6
USP29Q9HBJ7 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 MIR3180-4-201ENST00000582223 153 ntBASIC18.78■□□□□ 0.6
USP29Q9HBJ7 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 AC141257.4-201ENST00000634557 245 ntBASIC18.78■□□□□ 0.6
USP29Q9HBJ7 AC136944.6-201ENST00000634818 245 ntBASIC18.78■□□□□ 0.6
USP29Q9HBJ7 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP29Q9HBJ7 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 HOMER2P1-201ENST00000455653 964 ntBASIC18.77■□□□□ 0.6
USP29Q9HBJ7 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USP29Q9HBJ7 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms