Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC28BQ9BUN5 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 AP003097.1-201ENST00000530657 1135 ntBASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 AL353708.3-201ENST00000610272 989 ntBASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 AL109923.1-201ENST00000618799 583 ntBASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28BQ9BUN5 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC28BQ9BUN5 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC28BQ9BUN5 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC28BQ9BUN5 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 AC034236.2-201ENST00000606662 1610 ntBASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 KSR1P1-201ENST00000446298 240 ntBASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 AC011298.2-201ENST00000617989 482 ntBASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 AC018695.7-201ENST00000624587 2492 ntBASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 LINC01126-201ENST00000623515 1646 ntBASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC28BQ9BUN5 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 RPS2P4-201ENST00000476944 856 ntBASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 AC008622.2-201ENST00000617006 1229 ntBASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC28BQ9BUN5 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms