Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 AC011506.1-201ENST00000474329 610 ntBASIC15.95■□□□□ 0.14
NKX3-1Q99801 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
NKX3-1Q99801 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
NKX3-1Q99801 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 PCDHA12-202ENST00000613593 2588 ntBASIC15.94■□□□□ 0.14
NKX3-1Q99801 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 AC133681.1-201ENST00000465482 601 ntBASIC15.94■□□□□ 0.14
NKX3-1Q99801 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 AC008550.1-201ENST00000511500 884 ntBASIC15.94■□□□□ 0.14
NKX3-1Q99801 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 CABP2-204ENST00000636477 941 ntTSL 5 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC15.94■□□□□ 0.14
NKX3-1Q99801 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
NKX3-1Q99801 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 MIR718-201ENST00000390190 70 ntBASIC15.93■□□□□ 0.14
NKX3-1Q99801 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 CKBP1-201ENST00000565489 1086 ntBASIC15.93■□□□□ 0.14
NKX3-1Q99801 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.93■□□□□ 0.14
NKX3-1Q99801 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
NKX3-1Q99801 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms