Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RTF1Q92541 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
RTF1Q92541 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC23.75■■□□□ 1.39
RTF1Q92541 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC23.75■■□□□ 1.39
RTF1Q92541 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC23.75■■□□□ 1.39
RTF1Q92541 RN7SL510P-201ENST00000581311 263 ntBASIC23.75■■□□□ 1.39
RTF1Q92541 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
RTF1Q92541 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RTF1Q92541 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC23.75■■□□□ 1.39
RTF1Q92541 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RTF1Q92541 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
RTF1Q92541 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RTF1Q92541 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RTF1Q92541 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
RTF1Q92541 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RTF1Q92541 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RTF1Q92541 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC23.75■■□□□ 1.39
RTF1Q92541 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC23.75■■□□□ 1.39
RTF1Q92541 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC23.75■■□□□ 1.39
RTF1Q92541 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC23.74■■□□□ 1.39
RTF1Q92541 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
RTF1Q92541 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
RTF1Q92541 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
RTF1Q92541 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
RTF1Q92541 MINOS1P3-201ENST00000457048 203 ntBASIC23.74■■□□□ 1.39
RTF1Q92541 KRT18P31-201ENST00000506277 1292 ntBASIC23.74■■□□□ 1.39
RTF1Q92541 IFNL4P1-201ENST00000607083 540 ntBASIC23.74■■□□□ 1.39
RTF1Q92541 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC23.74■■□□□ 1.39
RTF1Q92541 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
RTF1Q92541 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC23.74■■□□□ 1.39
RTF1Q92541 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RTF1Q92541 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RTF1Q92541 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RTF1Q92541 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RTF1Q92541 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RTF1Q92541 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
RTF1Q92541 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
RTF1Q92541 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
RTF1Q92541 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC23.73■■□□□ 1.39
RTF1Q92541 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC23.73■■□□□ 1.39
RTF1Q92541 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
RTF1Q92541 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
RTF1Q92541 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC23.73■■□□□ 1.39
RTF1Q92541 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 AC068472.1-201ENST00000474589 881 ntBASIC23.73■■□□□ 1.39
RTF1Q92541 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC23.73■■□□□ 1.39
RTF1Q92541 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC23.73■■□□□ 1.39
RTF1Q92541 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC23.73■■□□□ 1.39
RTF1Q92541 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 LINC01711-201ENST00000598340 967 ntBASIC23.73■■□□□ 1.39
RTF1Q92541 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 AL353801.3-201ENST00000609898 542 ntBASIC23.73■■□□□ 1.39
RTF1Q92541 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
RTF1Q92541 AC009154.2-201ENST00000621177 724 ntBASIC23.73■■□□□ 1.39
RTF1Q92541 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC23.73■■□□□ 1.39
RTF1Q92541 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
RTF1Q92541 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
RTF1Q92541 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC23.72■■□□□ 1.39
RTF1Q92541 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
RTF1Q92541 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC23.72■■□□□ 1.39
RTF1Q92541 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 AC004870.1-201ENST00000315132 882 ntBASIC23.72■■□□□ 1.39
RTF1Q92541 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC23.72■■□□□ 1.39
RTF1Q92541 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC23.72■■□□□ 1.39
RTF1Q92541 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC23.72■■□□□ 1.39
RTF1Q92541 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC23.72■■□□□ 1.39
RTF1Q92541 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC23.72■■□□□ 1.39
RTF1Q92541 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC23.72■■□□□ 1.39
RTF1Q92541 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC23.72■■□□□ 1.39
RTF1Q92541 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC23.72■■□□□ 1.39
RTF1Q92541 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC23.72■■□□□ 1.39
RTF1Q92541 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RTF1Q92541 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RTF1Q92541 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RTF1Q92541 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RTF1Q92541 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms